Rh7CG173000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003285
Physical Location & Seq
Reverse (-)
14654044 .. 14654403
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG173000.1

Sequence Viewer

Length: 360 bp
ATGTCGAATTTCAACATCGTGAAGTACAGGTCTGATCTGAAGACGATTACAAAGGGAGGCGACTCGGTGAATATGTATGTGGGGAGGATTGATGAGATAAGGACGAAGATAGCCGGGTTTTCGGTGATGGTGGACGACGCGGAGATGATTGGGCATGCTCTGAGGGGGTTGCCGGAGGATTATGAGGCGTTTGGGAACTCGATTACGACGAGGAATGAGCCACTGCTGTTGAATGAGTTTTATGTGTTGTTGCTGGCGGAGGAGGCTTCTATTTTGGTAGGGAATCAGTTACAGAGAGTTTTGAGTTTCGGGTTTCGAATTTCCGGTGGTGCTGGGAATGGTAAAGAGCTCTGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

5.11

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 2 cut(s) 140, 257
AcsI RAATTY 2 cut(s) 7, 318
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 13, 232
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 7, 318
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 79, 136
AsuII TTCGAA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 351
BccI CCATC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 323
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 3 cut(s) 114, 173, 324
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 2 cut(s) 140, 257
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 316
BssMI GATC 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 156, 255
BstDEI CTNAG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 156, 255
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 1 cut(s) 155
CviJI RGCY 4 cut(s) 113, 220, 266, 349
CviKI_1 RGCY 4 cut(s) 113, 220, 266, 349
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 158
FaiI YATR 5 cut(s) 74, 78, 156, 183, 243
FatI CATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 336
HapII CCGG 3 cut(s) 114, 173, 324
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 158
HinfI GANTC 2 cut(s) 62, 283
HpaII CCGG 3 cut(s) 114, 173, 324
HphI GGTGA 2 cut(s) 79, 136
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 34, 39, 162
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 140, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 13, 127, 186, 239, 318, 337
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 2 cut(s) 52, 118
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 7, 318
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 8 cut(s) 50, 78, 156, 169, 178, 204, 253, 256
MspI CCGG 3 cut(s) 114, 173, 324
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 115
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 158
NspI RCATGY 1 cut(s) 158
NspV TTCGAA 1 cut(s) 316
PaeI GCATGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PfeI GAWTC 1 cut(s) 283
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 332
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 351
SetI ASST 2 cut(s) 32, 351
SfuI TTCGAA 1 cut(s) 316
SphI GCATGC 1 cut(s) 158
Sse9I AATT 2 cut(s) 7, 318
SsiI CCGC 2 cut(s) 140, 257
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 113
TaqI TCGA 3 cut(s) 5, 200, 316
TasI AATT 2 cut(s) 7, 318
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 283
TscAI CASTG 1 cut(s) 228
TspRI CASTG 1 cut(s) 228
XapI RAATTY 2 cut(s) 7, 318
XceI RCATGY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.