Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

67585030 .. 67587037

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCGACGTCACCATCAAAACCCCTGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGGTGAATGTGTATGTGGGGAGGATTGATGAGATAAGGACGAAGCTCTCGTCTGGTTTGATTGGGGAGGATTCTAATTTGGCGATAACCGAGAGGGCGACGACGAGCCAATTGACTGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGCTCGCGGCTCAGCCCTTGATCAATGTTCAAAATTGCTGGGTTATTCACTCCAGTCACTCCACCGAAAGAGATTTGAAGAAGGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

191

Amino Acids

19.86

Weight (kDa)

4.59

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
AatII	GACGTC	2 cut(s)	11, 107
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	64, 492
AciI	CCGC	2 cut(s)	62, 492
AcsI	RAATTY	2 cut(s)	31, 358
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	3 cut(s)	8, 93, 104
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	84, 377, 516, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	3 cut(s)	69, 87, 184
AluI	AGCT	3 cut(s)	69, 87, 184
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	2 cut(s)	31, 358
ArsI	GACNNNNNNTTYG	4 cut(s)	94, 126, 173, 205
AspLEI	GCGC	2 cut(s)	66, 95
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	4 cut(s)	3, 63, 154, 343
AvaII	GGWCC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	458
BfoI	RGCGCY	1 cut(s)	96
BisI	GCNGC	2 cut(s)	67, 493
BlpI	GCTNAGC	1 cut(s)	496
BlsI	GCNGC	2 cut(s)	68, 494
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	94, 298
BpmI	CTGGAG	1 cut(s)	521
Bpu1102I	GCTNAGC	1 cut(s)	496
BsaHI	GRCGYC	3 cut(s)	8, 93, 104
BsaI	GGTCTC	1 cut(s)	458
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	538
BseMII	CTCAG	3 cut(s)	89, 255, 510
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	64, 492
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	47, 96
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	505
Bsp1720I	GCTNAGC	1 cut(s)	496
BspACI	CCGC	2 cut(s)	62, 492
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	88, 256, 509
BspFNI	CGCG	2 cut(s)	64, 492
BspLI	GGNNCC	2 cut(s)	94, 298
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	3 cut(s)	8, 93, 104
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	3 cut(s)	8, 93, 104
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	75, 264, 496
BstFNI	CGCG	2 cut(s)	64, 492
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	66, 95
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 63
BstUI	CGCG	2 cut(s)	64, 492
BstV1I	GCAGC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	2 cut(s)	66, 95
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	99
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	75, 264, 496
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	59
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
FaiI	YATR	2 cut(s)	153, 574
FbaI	TGATCA	1 cut(s)	505
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	67, 493
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	67, 493
GlaI	GCGC	2 cut(s)	65, 94
GluI	GCNGC	2 cut(s)	67, 493
GsaI	CCCAGC	1 cut(s)	527
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	47, 96
HhaI	GCGC	2 cut(s)	66, 95
Hin1I	GRCGYC	3 cut(s)	8, 93, 104
Hin6I	GCGC	2 cut(s)	64, 93
HinP1I	GCGC	2 cut(s)	64, 93
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	50, 209
HpaII	CCGG	2 cut(s)	47, 96
HphI	GGTGA	4 cut(s)	3, 63, 154, 343
Hpy166II	GTNNAC	2 cut(s)	6, 334
Hpy188I	TCNGA	6 cut(s)	78, 109, 265, 301, 346, 355
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	2 cut(s)	6, 334
Hpy99I	CGWCG	5 cut(s)	10, 106, 109, 241, 244
HpyAV	CCTTC	3 cut(s)	385, 470, 560
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	3 cut(s)	8, 104, 336
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 63
HpyF3I	CTNAG	3 cut(s)	75, 264, 496
HpySE526I	ACGT	3 cut(s)	8, 104, 336
Hsp92I	GRCGYC	3 cut(s)	8, 93, 104
HspAI	GCGC	2 cut(s)	64, 93
KasI	GGCGCC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	505
LpnPI	CCDG	7 cut(s)	38, 60, 75, 109, 177, 509, 551
Lsp1109I	GCAGC	1 cut(s)	78
MaeII	ACGT	3 cut(s)	8, 104, 336
MaeIII	GTNAC	2 cut(s)	9, 540
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	389, 392, 428, 575
MfeI	CAATTG	2 cut(s)	248, 306
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	6 cut(s)	31, 214, 248, 306, 358, 518
Mly113I	GGCGCC	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	3 cut(s)	87, 324, 385
MseI	TTAA	1 cut(s)	291
MspI	CCGG	2 cut(s)	47, 96
MunI	CAATTG	2 cut(s)	248, 306
MvnI	CGCG	2 cut(s)	64, 492
MwoI	GCNNNNNNNGC	2 cut(s)	43, 63
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	1 cut(s)	505
NlaIV	GGNNCC	2 cut(s)	94, 298
NmuCI	GTSAC	2 cut(s)	9, 540
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 185
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	68, 494
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	94, 298
PspPI	GGNCC	1 cut(s)	297
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	67, 493
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	59
SfoI	GGCGCC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	6 cut(s)	31, 214, 248, 306, 358, 518
SsiI	CCGC	2 cut(s)	62, 492
SspDI	GGCGCC	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	3 cut(s)	11, 107, 339
TaqI	TCGA	3 cut(s)	5, 53, 474
TasI	AATT	6 cut(s)	31, 214, 248, 306, 358, 518
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	9, 540
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	2 cut(s)	9, 540
TspDTI	ATGAA	2 cut(s)	429, 459
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	2 cut(s)	31, 358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	5
ZraI	GACGTC	2 cut(s)	9, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.