Rh5DG506800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003285
Physical Location & Seq
Reverse (-)
79198297 .. 79199368
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG506800.1

Sequence Viewer

Length: 234 bp
ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCTGGAGTCGAACCCATCGCGCAGCTCACCTCAGACTTCAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.22

Weight (kDa)

6.89

Isoelectric Point (pI)

15.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 6, 66, 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 211, 229
AluI AGCT 2 cut(s) 211, 229
AoxI GGCC 2 cut(s) 3, 130
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 37, 95
AsuHPI GGTGA 4 cut(s) 103, 112, 145, 205
AvaII GGWCC 2 cut(s) 37, 95
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 70, 122, 164, 209
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BfaI CTAG 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BpmI CTGGAG 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 5, 132
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 5, 132
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 3 cut(s) 6, 66, 123
BspANI GGCC 2 cut(s) 5, 132
BspCNI CTCAG 1 cut(s) 230
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 138, 185
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 132
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 62
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 37, 95
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 5, 132, 211, 229
CviKI_1 RGCY 4 cut(s) 5, 132, 211, 229
DdeI CTNAG 1 cut(s) 217
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 37, 95
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 51, 58, 107
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 6, 209
FspBI CTAG 1 cut(s) 232
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 6, 209
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 5, 132
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 73, 192
HphI GGTGA 4 cut(s) 103, 112, 145, 205
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 149, 152
HpyCH4IV ACGT 2 cut(s) 144, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 185
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 2 cut(s) 144, 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 20, 78, 174
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 1 cut(s) 232
MaeII ACGT 2 cut(s) 144, 150
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 7 cut(s) 22, 50, 79, 108, 143, 191, 226
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 138, 185
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 192
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 37, 95
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 1 cut(s) 201
SetI ASST 5 cut(s) 147, 153, 213, 218, 231
SgeI CNNG 8 cut(s) 47, 82, 105, 118, 140, 179, 201, 217
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 2 cut(s) 37, 95
Sse9I AATT 1 cut(s) 173
SsiI CCGC 3 cut(s) 6, 66, 123
SspMI CTAG 1 cut(s) 232
TaiI ACGT 2 cut(s) 147, 153
TaqI TCGA 3 cut(s) 71, 147, 195
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 73
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 232
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.