Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

51536338 .. 51536646

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG388600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACTGCCCATGGCCTCTACGACAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCATCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTAGTGAATGTGTATGTGGGGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

5.88

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	153, 249
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	206
AciI	CCGC	3 cut(s)	6, 66, 204
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	150, 246
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	2 cut(s)	211, 229
AluI	AGCT	2 cut(s)	211, 229
AoxI	GGCC	2 cut(s)	3, 130
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	37, 95
AsuHPI	GGTGA	3 cut(s)	103, 145, 205
AvaII	GGWCC	2 cut(s)	37, 95
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	70, 122, 164
BclI	TGATCA	1 cut(s)	108
BisI	GCNGC	2 cut(s)	6, 209
BlsI	GCNGC	2 cut(s)	7, 210
Bme18I	GGWCC	2 cut(s)	37, 95
BmgT120I	GGNCC	2 cut(s)	37, 95
BmsI	GCATC	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	150, 246
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	5, 132
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	5, 132
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	3 cut(s)	6, 66, 204
BspANI	GGCC	2 cut(s)	5, 132
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	2 cut(s)	150, 246
BssT1I	CCWWGG	1 cut(s)	127
BstACI	GRCGYC	2 cut(s)	150, 246
BstDEI	CTNAG	2 cut(s)	217, 281
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 205
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	5, 132
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	37, 95
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	106, 128
CviJI	RGCY	5 cut(s)	5, 132, 199, 211, 229
CviKI_1	RGCY	5 cut(s)	5, 132, 199, 211, 229
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	217, 281
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	37, 95
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	109, 131
FaiI	YATR	5 cut(s)	51, 58, 107, 129, 295
FatI	CATG	2 cut(s)	105, 127
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	6, 209
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	6, 209
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	6, 209
HaeIII	GGCC	2 cut(s)	5, 132
HapII	CCGG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	2 cut(s)	150, 246
Hin1II	CATG	2 cut(s)	109, 131
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	73, 192
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	103, 145, 205
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	220, 251
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	4 cut(s)	149, 152, 248, 251
HpyCH4IV	ACGT	3 cut(s)	144, 150, 246
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 205
HpyF3I	CTNAG	2 cut(s)	217, 281
HpySE526I	ACGT	3 cut(s)	144, 150, 246
Hsp92I	GRCGYC	2 cut(s)	150, 246
Hsp92II	CATG	2 cut(s)	109, 131
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	20, 78, 202, 217
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	3 cut(s)	144, 150, 246
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	9 cut(s)	22, 50, 79, 108, 143, 191, 226, 267, 295
MspI	CCGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	185, 205
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	109, 131
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 192
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	7, 210
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	37, 95
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	2 cut(s)	6, 209
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	37, 95
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	147, 153, 213, 218, 231, 249
SfaNI	GCATC	1 cut(s)	244
SgrDI	CGTCGACG	1 cut(s)	146
SinI	GGWCC	2 cut(s)	37, 95
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	3 cut(s)	6, 66, 204
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	3 cut(s)	147, 153, 249
TaqI	TCGA	3 cut(s)	71, 147, 195
TasI	AATT	1 cut(s)	173
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	73
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	151
TspRI	CASTG	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	37, 95
XapI	RAATTY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	147
ZraI	GACGTC	2 cut(s)	151, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.