Rh1AG424100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003285
Physical Location & Seq
Reverse (-)
65355431 .. 65356292
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG424100.1

Sequence Viewer

Length: 366 bp
ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCATACTTCAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACGATTACAAACCTTTGGAGTTTGGATTGTGGAACAATGAAGTTCAATTTGCTGGTGAGCTTAAACTCAAGGATTATAGCTACCGGTTGAAGATTCGCCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.7

Weight (kDa)

9.13

Isoelectric Point (pI)

18.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 153, 249
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 206
AciI CCGC 4 cut(s) 6, 66, 123, 204
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 3 cut(s) 150, 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 226, 305, 349
AluBI AGCT 4 cut(s) 211, 229, 319, 339
AluI AGCT 4 cut(s) 211, 229, 319, 339
AoxI GGCC 2 cut(s) 3, 130
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsiGI ACCGGT 1 cut(s) 342
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 2 cut(s) 37, 95
AsuHPI GGTGA 5 cut(s) 103, 112, 145, 205, 326
AvaII GGWCC 2 cut(s) 37, 95
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 70, 122, 164
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BmiI GGNNCC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 3 cut(s) 150, 235, 246
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 237, 342
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 5, 132
BshNI GGYRCC 1 cut(s) 234
BshTI ACCGGT 1 cut(s) 342
BsiSI CCGG 3 cut(s) 189, 238, 343
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 5, 132
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 4 cut(s) 6, 66, 123, 204
BspANI GGCC 2 cut(s) 5, 132
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 237, 342
BssAI RCCGGY 2 cut(s) 237, 342
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 3 cut(s) 150, 235, 246
BstACI GRCGYC 3 cut(s) 150, 235, 246
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 138, 185, 205
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 132
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 62
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr10I RCCGGY 2 cut(s) 237, 342
Cfr13I GGNCC 2 cut(s) 37, 95
Csp6I GTAC 1 cut(s) 241
CspAI ACCGGT 1 cut(s) 342
CviAII CATG 1 cut(s) 106
CviJI RGCY 7 cut(s) 5, 132, 199, 211, 229, 319, 339
CviKI_1 RGCY 7 cut(s) 5, 132, 199, 211, 229, 319, 339
CviQI GTAC 1 cut(s) 241
DinI GGCGCC 1 cut(s) 236
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 37, 95
EcoT38I GRGCYC 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 1 cut(s) 109
FaiI YATR 5 cut(s) 51, 58, 107, 220, 336
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 6, 209
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 2 cut(s) 6, 209
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 5, 132
HapII CCGG 3 cut(s) 189, 238, 343
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 3 cut(s) 150, 235, 246
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 73, 192, 352
HpaII CCGG 3 cut(s) 189, 238, 343
HphI GGTGA 5 cut(s) 103, 112, 145, 205, 326
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 4 cut(s) 149, 152, 248, 251
HpyCH4IV ACGT 3 cut(s) 144, 150, 246
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 185, 205
HpySE526I ACGT 3 cut(s) 144, 150, 246
Hsp92I GRCGYC 3 cut(s) 150, 235, 246
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 7 cut(s) 20, 78, 202, 217, 251, 297, 356
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 3 cut(s) 144, 150, 246
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 2 cut(s) 109, 361
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 173, 305
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 7 cut(s) 22, 50, 79, 108, 143, 191, 226
MseI TTAA 1 cut(s) 321
MspI CCGG 3 cut(s) 189, 238, 343
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 138, 185, 205
NarI GGCGCC 1 cut(s) 235
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 192
PfeI GAWTC 2 cut(s) 73, 352
PinAI ACCGGT 1 cut(s) 342
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 37, 95
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 201
SetI ASST 9 cut(s) 147, 153, 213, 218, 231, 249, 274, 321, 341
SfoI GGCGCC 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 2 cut(s) 37, 95
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 173, 305
SsiI CCGC 4 cut(s) 6, 66, 123, 204
SspDI GGCGCC 1 cut(s) 234
TaiI ACGT 3 cut(s) 147, 153, 249
TaqI TCGA 3 cut(s) 71, 147, 195
TasI AATT 2 cut(s) 173, 305
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 73, 352
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 147
ZraI GACGTC 2 cut(s) 151, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.