Rh2AG352900

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003285
Physical Location & Seq
Forward (+)
52210501 .. 52212828
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG352900.1

Sequence Viewer

Length: 717 bp
ATGATCACCATCTTCACCACCCACGGCCTCTACGGCAACGTCGATGTCACCATCAAAACTCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCTGGTATGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGAGGGCGACGACAAATTTGAGGGCGACGACGAGCCAATTGACTGTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAAAGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGAGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGCTCTTCCTTTTGCTAAGCTGATCACATATAATATCACCATGGACGTGATGCTCAGCCCGAAGAAGCTCATCAAAATGACCAAGAAGTTGCAGAAGGTACCTGTTATTGGGAGGAAGAGAACTTCACCCCCAACAGTCATTGGCAGTAACAAGATGAATAGTACTACCGCAGATAAGGGCACTTTTGTCATCTACACCCTTGACAAGAGACGTTTTATGCTTCCTTTATCCTATCCTATAAGGGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

238

Amino Acids

26.24

Weight (kDa)

5.08

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 176 - 233 3.7e-06 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 562
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 99, 633
AcsI RAATTY 3 cut(s) 68, 191, 346
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 564, 628
AfiI CCNNNNNNNGG 1 cut(s) 572
AgsI TTSAA 2 cut(s) 121, 365
AjiI CACGTC 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 5 cut(s) 106, 124, 467, 484, 532
AluI AGCT 5 cut(s) 106, 124, 467, 484, 532
Alw26I GTCTC 2 cut(s) 446, 667
AoxI GGCC 2 cut(s) 25, 268
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 3 cut(s) 68, 191, 346
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 176, 208
Asp700I GAANNNNTTC 1 cut(s) 468
Asp718I GGTACC 1 cut(s) 562
AspLEI GCGC 2 cut(s) 103, 132
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 7 cut(s) 7, 40, 100, 256, 331, 493, 582
AvaII GGWCC 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 647, 712
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 17, 59
BceAI ACGGC 2 cut(s) 40, 49
BclI TGATCA 2 cut(s) 3, 486
BcoDI GTCTC 2 cut(s) 446, 667
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 104
BlpI GCTNAGC 2 cut(s) 480, 518
BlsI GCNGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 285
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 286, 564
BmsI GCATC 1 cut(s) 504
Bpu1102I GCTNAGC 2 cut(s) 480, 518
BpuEI CTTGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 22, 504
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 22, 504
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMII CTCAG 3 cut(s) 126, 243, 532
BseRI GAGGAG 1 cut(s) 367
BseSI GKGCMC 2 cut(s) 647, 712
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 27, 270
BshNI GGYRCC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 2 cut(s) 446, 667
BsmBI CGTCTC 1 cut(s) 667
BsnI GGCC 2 cut(s) 27, 270
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 96, 647, 712
Bsp143I GATC 2 cut(s) 3, 486
Bsp1720I GCTNAGC 2 cut(s) 480, 518
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 2 cut(s) 99, 633
BspANI GGCC 2 cut(s) 27, 270
BspCNI CTCAG 3 cut(s) 125, 244, 531
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 286, 564
BspQI GCTCTTC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 22, 504
BssMI GATC 2 cut(s) 3, 486
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 221, 601
Bst6I CTCTTC 3 cut(s) 363, 474, 575
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 4 cut(s) 112, 252, 480, 518
BstDSI CCRYGG 2 cut(s) 22, 504
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 103, 132
BstKTI GATC 2 cut(s) 6, 489
BstMAI GTCTC 2 cut(s) 446, 667
BstMBI GATC 2 cut(s) 3, 486
BstMWI GCNNNNNNNGC 3 cut(s) 33, 80, 100
BstSLI GKGCMC 2 cut(s) 647, 712
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 27, 270
BtgI CCRYGG 2 cut(s) 22, 504
BtrI CACGTC 1 cut(s) 511
CfoI GCGC 2 cut(s) 103, 132
Cfr13I GGNCC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 563, 627
CviAII CATG 1 cut(s) 505
CviQI GTAC 2 cut(s) 563, 627
DdeI CTNAG 4 cut(s) 112, 252, 480, 518
DpnI GATC 2 cut(s) 5, 488
DpnII GATC 2 cut(s) 3, 486
Eam1104I CTCTTC 3 cut(s) 363, 474, 575
EarI CTCTTC 3 cut(s) 363, 474, 575
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 504
Esp3I CGTCTC 1 cut(s) 667
FaeI CATG 1 cut(s) 508
FaiI YATR 6 cut(s) 138, 493, 495, 506, 683, 704
FatI CATG 1 cut(s) 504
FbaI TGATCA 2 cut(s) 3, 486
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 2 cut(s) 102, 131
GluI GCNGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 2 cut(s) 27, 270
HapII CCGG 1 cut(s) 84
HhaI GCGC 2 cut(s) 103, 132
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 508
Hin6I GCGC 2 cut(s) 101, 130
HinP1I GCGC 2 cut(s) 101, 130
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 84
HphI GGTGA 7 cut(s) 7, 40, 100, 256, 331, 493, 582
Hpy188I TCNGA 6 cut(s) 115, 146, 253, 289, 334, 343
Hpy188III TCNNGA 2 cut(s) 62, 419
Hpy99I CGWCG 5 cut(s) 44, 146, 188, 206, 209
HpyAV CCTTC 2 cut(s) 373, 553
HpyCH4III ACNGT 2 cut(s) 221, 601
HpyCH4IV ACGT 4 cut(s) 39, 141, 510, 676
HpyCH4V TGCA 2 cut(s) 152, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 80, 100
HpyF3I CTNAG 4 cut(s) 112, 252, 480, 518
HpySE526I ACGT 4 cut(s) 39, 141, 510, 676
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 508
HspAI GCGC 2 cut(s) 101, 130
KpnI GGTACC 1 cut(s) 566
Ksp22I TGATCA 2 cut(s) 3, 486
Kzo9I GATC 2 cut(s) 3, 486
LguI GCTCTTC 1 cut(s) 474
LpnPI CCDG 4 cut(s) 97, 112, 118, 579
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 504
MaeII ACGT 4 cut(s) 39, 141, 510, 676
MaeIII GTNAC 2 cut(s) 46, 611
MalI GATC 2 cut(s) 5, 488
MboI GATC 2 cut(s) 3, 486
MboII GAAGA 7 cut(s) 4, 377, 380, 416, 461, 538, 592
MfeI CAATTG 2 cut(s) 213, 294
MhlI GDGCHC 3 cut(s) 96, 647, 712
MluCI AATT 5 cut(s) 68, 191, 213, 294, 346
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 3 cut(s) 124, 312, 373
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 2 cut(s) 279, 715
MslI CAYNNNNRTG 2 cut(s) 509, 539
MspI CCGG 1 cut(s) 84
MunI CAATTG 2 cut(s) 213, 294
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 33, 80, 100
NcoI CCATGG 1 cut(s) 504
NdeII GATC 2 cut(s) 3, 486
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 2 cut(s) 286, 564
NmuCI GTSAC 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PdmI GAANNNNTTC 1 cut(s) 468
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 286, 564
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 2 cut(s) 564, 628
RsaNI GTAC 2 cut(s) 563, 627
RseI CAYNNNNRTG 2 cut(s) 509, 539
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 279, 715
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 2 cut(s) 3, 486
Sau96I GGNCC 1 cut(s) 285
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 3 cut(s) 96, 647, 712
SfaNI GCATC 1 cut(s) 504
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 509, 539
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 5 cut(s) 68, 191, 213, 294, 346
SsiI CCGC 2 cut(s) 99, 633
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 221, 601
TaiI ACGT 4 cut(s) 42, 144, 513, 679
TaqI TCGA 3 cut(s) 42, 90, 462
TasI AATT 5 cut(s) 68, 191, 213, 294, 346
TatI WGTACW 1 cut(s) 626
Tru1I TTAA 2 cut(s) 279, 715
Tru9I TTAA 2 cut(s) 279, 715
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 417, 447, 635
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 3 cut(s) 68, 191, 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 468
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.