Rh3CG340800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003285
Physical Location & Seq
Forward (+)
38367130 .. 38367368
239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG340800.1

Sequence Viewer

Length: 204 bp
ATGATCACCATCTTCACCGCCCACGGTCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTTAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGGTGAATGTGTATGTGGGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.49

Weight (kDa)

5.18

Isoelectric Point (pI)

20.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 48, 144
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 18, 99
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 3 cut(s) 45, 130, 141
AfaI GTAC 1 cut(s) 137
AluBI AGCT 2 cut(s) 106, 124
AluI AGCT 2 cut(s) 106, 124
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 2 cut(s) 103, 132
AsuHPI GGTGA 4 cut(s) 7, 40, 100, 191
BanI GGYRCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 17, 59
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 3 cut(s) 45, 130, 141
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 84, 133
BsmAI GTCTC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 18, 99
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 3 cut(s) 45, 130, 141
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 3 cut(s) 45, 130, 141
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 103, 132
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 80, 100
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 115
BtgI CCRYGG 1 cut(s) 22
CfoI GCGC 2 cut(s) 103, 132
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 3 cut(s) 94, 106, 124
CviKI_1 RGCY 3 cut(s) 94, 106, 124
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 112
DinI GGCGCC 1 cut(s) 131
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
FaiI YATR 1 cut(s) 190
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 2 cut(s) 102, 131
GluI GCNGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 133
HapII CCGG 2 cut(s) 84, 133
HhaI GCGC 2 cut(s) 103, 132
Hin1I GRCGYC 3 cut(s) 45, 130, 141
Hin6I GCGC 2 cut(s) 101, 130
HinP1I GCGC 2 cut(s) 101, 130
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 87
HpaII CCGG 2 cut(s) 84, 133
HphI GGTGA 4 cut(s) 7, 40, 100, 191
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 115, 146
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 4 cut(s) 44, 47, 143, 146
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 3 cut(s) 39, 45, 141
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 100
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 3 cut(s) 39, 45, 141
Hsp92I GRCGYC 3 cut(s) 45, 130, 141
HspAI GCGC 2 cut(s) 101, 130
KasI GGCGCC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 97, 112, 146
Lsp1109I GCAGC 1 cut(s) 115
MaeII ACGT 3 cut(s) 39, 45, 141
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 68
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 4 cut(s) 86, 121, 162, 190
MseI TTAA 1 cut(s) 120
MspI CCGG 2 cut(s) 84, 133
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 80, 100
NarI GGCGCC 1 cut(s) 130
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 42, 48, 108, 113, 126, 144
SfoI GGCGCC 1 cut(s) 131
SgeI CNNG 8 cut(s) 35, 74, 96, 103, 112, 139, 145, 188
SgrDI CGTCGACG 1 cut(s) 41
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 18, 99
SspDI GGCGCC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 3 cut(s) 42, 48, 144
TaqI TCGA 2 cut(s) 42, 90
TasI AATT 1 cut(s) 68
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 46
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 42
ZraI GACGTC 2 cut(s) 46, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.