Rh7BG199000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003285
Physical Location & Seq
Reverse (-)
16402383 .. 16402586
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG199000.1

Sequence Viewer

Length: 204 bp
ATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCTCGACAAATTCGCCCTCAACGCCGGAGTCGAACCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACATCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGGTGAATGTGTATGTGGGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

5.18

Isoelectric Point (pI)

23.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 18, 99
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 2 cut(s) 45, 130
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 106, 124
AluI AGCT 2 cut(s) 106, 124
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 2 cut(s) 103, 132
AsuHPI GGTGA 4 cut(s) 7, 40, 100, 191
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 17, 59
BceAI ACGGC 2 cut(s) 40, 49
BclI TGATCA 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 45, 130
BsaJI CCNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 84, 133
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 18, 99
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 45, 130
BstACI GRCGYC 2 cut(s) 45, 130
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 103, 132
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 33, 80
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 22
CfoI GCGC 2 cut(s) 103, 132
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 3 cut(s) 27, 106, 124
CviKI_1 RGCY 3 cut(s) 27, 106, 124
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 112
DinI GGCGCC 1 cut(s) 131
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
FaiI YATR 1 cut(s) 190
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 2 cut(s) 102, 131
GluI GCNGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 84, 133
HhaI GCGC 2 cut(s) 103, 132
Hin1I GRCGYC 2 cut(s) 45, 130
Hin6I GCGC 2 cut(s) 101, 130
HinP1I GCGC 2 cut(s) 101, 130
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 87
HpaII CCGG 2 cut(s) 84, 133
HphI GGTGA 4 cut(s) 7, 40, 100, 191
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 115, 146
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 2 cut(s) 44, 47
HpyCH4IV ACGT 2 cut(s) 39, 45
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 80
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 39, 45
Hsp92I GRCGYC 2 cut(s) 45, 130
HspAI GCGC 2 cut(s) 101, 130
KasI GGCGCC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 97, 112, 146
Lsp1109I GCAGC 1 cut(s) 115
MaeII ACGT 2 cut(s) 39, 45
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 4
MluCI AATT 1 cut(s) 68
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 6 cut(s) 38, 71, 86, 121, 162, 190
MspI CCGG 2 cut(s) 84, 133
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 33, 80
NarI GGCGCC 1 cut(s) 130
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 96
SetI ASST 5 cut(s) 42, 48, 108, 113, 126
SfoI GGCGCC 1 cut(s) 131
SgeI CNNG 8 cut(s) 35, 74, 96, 112, 133, 139, 145, 188
SgrDI CGTCGACG 1 cut(s) 41
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 18, 99
SspDI GGCGCC 1 cut(s) 129
TaiI ACGT 2 cut(s) 42, 48
TaqI TCGA 3 cut(s) 42, 63, 90
TasI AATT 1 cut(s) 68
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 46
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 42
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.