Rmu_sc0003941.1_g000015

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003941.1
OG0003285
Physical Location & Seq
Forward (+)
79917 .. 81387
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003941.1_g000015.1.cds

Sequence Viewer

Length: 1281 bp
atggccgcttcctcctacccaaaaaccccaaatctggtcctcacacatcacatcatatctcatatatccatccgcctcgaatccaccaactactttatctggtgctcatctcatgatcaccatcttcaccgcccacgctcacctcagactttaagctctagcgccggtacgacgtcggatttgcagacgattacaaagggaggcgacttggtgaatgtgtatgtggggaggattgatgagataagccgaccgcgcagctcacctcagactttaagctctggcgccggtacgacgtcggatttgcagacgattacaaagggaggcgacttgggcgacgacgagccaattgactgtgagcgtggttctgtggtggaggtgaagtctgaggtaggtggtggaggccaaatcgttaatgggtccgacccaattgattgtgggcttggtagtgtggtgaacgtgaagtctgaagtttcaaaaaatttgaggagttctattgaagaagagttggggaaggttagtttggttggagggaatgaagaaagtttggttcttgatagtgggaatgaagtgagtgaggatttggagaccaaaatcgaaggtgtggagggtttgaagagcaaaatggagagtgggattgagagcgaaagttcggatttggagagtgagagtgagagtgagagttcatcagtagcagcatcttcttcgagtagtagctctagtgatgaggaggaggaggatgagagagagagtgatgatatggatgaggagaaggatggagaagggaatgtgaaggcggaggcggagaaggagggcaatgaggaggcttgtgaacttgaagaaggtaagataagtggtgcagagcagataggtaatggaagtggtgatgaggagattgaccgtgaaagttttcaggtgggattccaattttgggagtggagatgggagattgaaattttggattataagttgaattgtttgttcttgttttcagacgttgtttgttcttgttttctcaatttgaattggattagaagttgtcaaattgctgcatttgcatgtaatgtgagattcttgatgttgggggcggtaactgtggtcggggctgagctcacgttcgaggctgaaatcggaattcattttggggtgagtggttggtggctagtagctggtggcggagcttgcttcggaggttgcggcttagttagaacagaagaagaagaagaagaagaagaagaagaagaagaagaaatgaaaagaaaaataaaaataaaaatgaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

426

Amino Acids

46.21

Weight (kDa)

4.3

Isoelectric Point (pI)

67.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
AatII GACGTC 2 cut(s) 176, 296
AccB1I GGYRCC 1 cut(s) 281
AccII CGCG 1 cut(s) 253
AciI CCGC 9 cut(s) 6, 73, 130, 251, 794, 800, 1085, 1173, 1194
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 478, 951, 1131
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 3 cut(s) 173, 282, 293
AfaI GTAC 2 cut(s) 169, 289
AfiI CCNNNNNNNGG 2 cut(s) 34, 928
AgsI TTSAA 7 cut(s) 474, 497, 613, 836, 950, 970, 1021
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 7 cut(s) 156, 258, 276, 714, 1108, 1166, 1178
AluI AGCT 7 cut(s) 156, 258, 276, 714, 1108, 1166, 1178
Alw21I GWGCWC 2 cut(s) 107, 1110
Alw26I GTCTC 1 cut(s) 578
AoxI GGCC 2 cut(s) 3, 400
ApeKI GCWGC 3 cut(s) 255, 692, 1046
ApoI RAATTY 3 cut(s) 478, 951, 1131
ArsI GACNNNNNNTTYG 4 cut(s) 163, 195, 283, 315
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 3 cut(s) 164, 255, 284
AspS9I GGNCC 2 cut(s) 37, 417
AsuHPI GGTGA 9 cut(s) 110, 119, 132, 223, 252, 388, 463, 893, 1156
AvaII GGWCC 2 cut(s) 37, 417
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 1110
Bbv12I GWGCWC 2 cut(s) 107, 1110
BbvI GCAGC 3 cut(s) 267, 704, 1033
BccI CCATC 4 cut(s) 77, 129, 767, 933
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 3 cut(s) 159, 717, 1160
BfoI RGCGCY 2 cut(s) 165, 285
BisI GCNGC 5 cut(s) 6, 256, 693, 1047, 1195
BlpI GCTNAGC 1 cut(s) 1104
BlsI GCNGC 5 cut(s) 7, 257, 694, 1048, 1196
Bme18I GGWCC 2 cut(s) 37, 417
BmgT120I GGNCC 2 cut(s) 37, 417
BmiI GGNNCC 2 cut(s) 283, 418
BmsI GCATC 1 cut(s) 704
Bpu1102I GCTNAGC 1 cut(s) 1104
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 3 cut(s) 173, 282, 293
BsaI GGTCTC 1 cut(s) 578
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 928
Bse118I RCCGGY 2 cut(s) 164, 284
Bse3DI GCAATG 1 cut(s) 820
Bse8I GATNNNNATC 1 cut(s) 120
BseGI GGATG 4 cut(s) 69, 742, 766, 778
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 34, 928
BseMI GCAATG 1 cut(s) 820
BseMII CTCAG 4 cut(s) 158, 278, 375, 1095
BseRI GAGGAG 7 cut(s) 499, 740, 743, 746, 779, 833, 902
BseXI GCAGC 3 cut(s) 267, 704, 1033
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 5, 402
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 107, 1110
BsiSI CCGG 2 cut(s) 165, 285
BslI CCNNNNNNNGG 2 cut(s) 34, 928
BsmAI GTCTC 1 cut(s) 578
BsnI GGCC 2 cut(s) 5, 402
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 107, 1110
Bsp143I GATC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 1104
BspACI CCGC 9 cut(s) 6, 73, 130, 251, 794, 800, 1085, 1173, 1194
BspANI GGCC 2 cut(s) 5, 402
BspCNI CTCAG 4 cut(s) 157, 277, 376, 1096
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 283, 418
BspQI GCTCTTC 1 cut(s) 608
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 820
BsrFI RCCGGY 2 cut(s) 164, 284
BssAI RCCGGY 2 cut(s) 164, 284
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 3 cut(s) 173, 282, 293
Bst4CI ACNGT 3 cut(s) 353, 899, 1093
Bst6I CTCTTC 2 cut(s) 495, 608
BstACI GRCGYC 3 cut(s) 173, 282, 293
BstC8I GCNNGC 1 cut(s) 1180
BstDEI CTNAG 5 cut(s) 144, 264, 384, 1104, 1198
BstF5I GGATG 4 cut(s) 69, 742, 766, 778
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 2 cut(s) 165, 285
BstHHI GCGC 3 cut(s) 164, 255, 284
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 4 cut(s) 252, 330, 1052, 1179
BstNSI RCATGY 1 cut(s) 1059
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 267, 704, 1033
BsuRI GGCC 2 cut(s) 5, 402
BtsCI GGATG 4 cut(s) 69, 742, 766, 778
Cac8I GCNNGC 1 cut(s) 1180
CciI TCATGA 1 cut(s) 112
CfoI GCGC 3 cut(s) 164, 255, 284
Cfr10I RCCGGY 2 cut(s) 164, 284
Cfr13I GGNCC 2 cut(s) 37, 417
Csp6I GTAC 2 cut(s) 168, 288
CviAII CATG 2 cut(s) 113, 1056
CviQI GTAC 2 cut(s) 168, 288
DdeI CTNAG 5 cut(s) 144, 264, 384, 1104, 1198
DinI GGCGCC 1 cut(s) 283
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 495, 608
EarI CTCTTC 2 cut(s) 495, 608
EciI GGCGGA 4 cut(s) 62, 809, 815, 1188
Ecl136II GAGCTC 1 cut(s) 1108
Eco24I GRGCYC 1 cut(s) 1110
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 2 cut(s) 37, 417
Eco53kI GAGCTC 1 cut(s) 1108
Eco57I CTGAAG 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 1108
EcoRI GAATTC 1 cut(s) 1131
EcoT38I GRGCYC 1 cut(s) 1110
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 2 cut(s) 116, 1059
FaiI YATR 8 cut(s) 56, 63, 65, 114, 222, 758, 963, 1057
FatI CATG 2 cut(s) 112, 1055
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 6, 256, 693, 1047, 1195
FokI GGATG 4 cut(s) 56, 749, 773, 785
FriOI GRGCYC 1 cut(s) 1110
Fsp4HI GCNGC 5 cut(s) 6, 256, 693, 1047, 1195
FspBI CTAG 3 cut(s) 159, 717, 1160
GlaI GCGC 3 cut(s) 163, 254, 283
GluI GCNGC 5 cut(s) 6, 256, 693, 1047, 1195
HaeII RGCGCY 2 cut(s) 165, 285
HaeIII GGCC 2 cut(s) 5, 402
HapII CCGG 2 cut(s) 165, 285
HhaI GCGC 3 cut(s) 164, 255, 284
Hin1I GRCGYC 3 cut(s) 173, 282, 293
Hin1II CATG 2 cut(s) 116, 1059
Hin6I GCGC 3 cut(s) 162, 253, 282
HinP1I GCGC 3 cut(s) 162, 253, 282
HinfI GANTC 3 cut(s) 80, 918, 1068
HpaII CCGG 2 cut(s) 165, 285
HphI GGTGA 9 cut(s) 110, 119, 132, 223, 252, 388, 463, 893, 1156
Hpy166II GTNNAC 2 cut(s) 454, 830
Hpy188III TCNNGA 3 cut(s) 113, 551, 1072
Hpy8I GTNNAC 2 cut(s) 454, 830
Hpy99I CGWCG 6 cut(s) 175, 178, 295, 298, 338, 341
HpyAV CCTTC 7 cut(s) 505, 590, 763, 773, 784, 799, 833
HpyCH4III ACNGT 3 cut(s) 353, 899, 1093
HpyCH4IV ACGT 5 cut(s) 173, 293, 456, 993, 1112
HpyCH4V TGCA 5 cut(s) 184, 304, 857, 1049, 1055
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 330, 1052, 1179
HpyF3I CTNAG 5 cut(s) 144, 264, 384, 1104, 1198
HpySE526I ACGT 5 cut(s) 173, 293, 456, 993, 1112
Hsp92I GRCGYC 3 cut(s) 173, 282, 293
Hsp92II CATG 2 cut(s) 116, 1059
HspAI GCGC 3 cut(s) 162, 253, 282
KasI GGCGCC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 608
LmnI GCTCC 1 cut(s) 1175
LpnPI CCDG 7 cut(s) 20, 85, 178, 264, 298, 896, 1152
Lsp1109I GCAGC 3 cut(s) 267, 704, 1033
LweI GCATC 1 cut(s) 704
MaeI CTAG 3 cut(s) 159, 717, 1160
MaeII ACGT 5 cut(s) 173, 293, 456, 993, 1112
MaeIII GTNAC 1 cut(s) 1087
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MfeI CAATTG 2 cut(s) 345, 426
MhlI GDGCHC 2 cut(s) 107, 1110
Mly113I GGCGCC 1 cut(s) 282
MmeI TCCRAC 4 cut(s) 156, 276, 444, 505
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 4 cut(s) 152, 272, 411, 1279
MslI CAYNNNNRTG 1 cut(s) 1054
MspI CCGG 2 cut(s) 165, 285
MunI CAATTG 2 cut(s) 345, 426
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 252, 330, 1052, 1179
NarI GGCGCC 1 cut(s) 282
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 116, 1059
NlaIV GGNNCC 2 cut(s) 283, 418
NspI RCATGY 1 cut(s) 1059
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 3 cut(s) 80, 918, 1068
PkrI GCNGC 5 cut(s) 7, 257, 694, 1048, 1196
PluTI GGCGCC 1 cut(s) 285
PsiI TTATAA 1 cut(s) 963
Psp124BI GAGCTC 1 cut(s) 1110
PspN4I GGNNCC 2 cut(s) 283, 418
PspPI GGNCC 2 cut(s) 37, 417
RsaI GTAC 2 cut(s) 169, 289
RsaNI GTAC 2 cut(s) 168, 288
RseI CAYNNNNRTG 1 cut(s) 1054
SacI GAGCTC 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 608
SaqAI TTAA 4 cut(s) 152, 272, 411, 1279
SatI GCNGC 5 cut(s) 6, 256, 693, 1047, 1195
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 37, 417
SduI GDGCHC 2 cut(s) 107, 1110
SfaNI GCATC 1 cut(s) 704
SfoI GGCGCC 1 cut(s) 283
SinI GGWCC 2 cut(s) 37, 417
SmiMI CAYNNNNRTG 1 cut(s) 1054
SsiI CCGC 9 cut(s) 6, 73, 130, 251, 794, 800, 1085, 1173, 1194
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 3 cut(s) 159, 717, 1160
SstI GAGCTC 1 cut(s) 1110
TaaI ACNGT 3 cut(s) 353, 899, 1093
TaiI ACGT 5 cut(s) 176, 296, 459, 996, 1115
TaqI TCGA 4 cut(s) 78, 594, 704, 1116
TauI GCSGC 2 cut(s) 8, 1197
TfiI GAWTC 3 cut(s) 80, 918, 1068
Tru1I TTAA 4 cut(s) 152, 272, 411, 1279
Tru9I TTAA 4 cut(s) 152, 272, 411, 1279
TseI GCWGC 3 cut(s) 255, 692, 1046
TspDTI ATGAA 5 cut(s) 549, 579, 672, 1124, 1265
VpaK11BI GGWCC 2 cut(s) 37, 417
XapI RAATTY 3 cut(s) 478, 951, 1131
XceI RCATGY 1 cut(s) 1059
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 3 cut(s) 159, 717, 1160
ZraI GACGTC 2 cut(s) 174, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.