Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

60799757 .. 60801944

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATCACCATCTTCACCGCCCACGGCCCTACGGCAACGTCGACGTCACCATCAAAACCCCCAACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCGGACTTCAAGCTGCGGCGCCGGCGACGACAAATTTGAGGGCGACGACGAGCCAATTGATTGTGAGCGTGGTTTTGTGGTGGAGGTGAAGTACGAGTTTCGAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGTGTGAAGAGCAAAATGGAGAGTGGGATTGAGAGTGAAAGAGAAAAGATTGGGAGGATTTGCGCACGGGACCTCCACCCATCTTTCCAAGATGCGGGGCTTTACTTGCCTTCGGCAAGGGCCAAGGAGGCAGCAAAACTAACGGTGACAATGTCAATGGATGCCATGGATGAGAAAGAAGATGATAGATCTGGTCTAGTAGGGAAGAGCGGCAAAAATTGCCGTGCTAGGGTTTTGGGGGAGGAACTAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

199

Amino Acids

21.4

Weight (kDa)

4.68

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
Acc16I	TGCGCA	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	41
AccII	CGCG	1 cut(s)	100
AciI	CCGC	5 cut(s)	18, 98, 126, 440, 555
AcsI	RAATTY	3 cut(s)	67, 143, 217
AcyI	GRCGYC	2 cut(s)	44, 129
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	439, 574
AgsI	TTSAA	2 cut(s)	120, 236
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	2 cut(s)	105, 123
AluI	AGCT	2 cut(s)	105, 123
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	25, 465
ApeKI	GCWGC	3 cut(s)	102, 123, 476
ApoI	RAATTY	3 cut(s)	67, 143, 217
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AspLEI	GCGC	3 cut(s)	102, 131, 410
AspS9I	GGNCC	3 cut(s)	26, 415, 465
AsuHPI	GGTGA	5 cut(s)	7, 39, 99, 208, 502
AvaII	GGWCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	110, 114, 488
BccI	CCATC	3 cut(s)	17, 58, 433
BceAI	ACGGC	3 cut(s)	40, 48, 552
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	3 cut(s)	542, 573, 593
BfoI	RGCGCY	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	5 cut(s)	103, 124, 127, 477, 556
BlsI	GCNGC	5 cut(s)	104, 125, 128, 478, 557
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	3 cut(s)	26, 415, 465
BmiI	GGNNCC	2 cut(s)	130, 416
BmsI	GCATC	2 cut(s)	427, 496
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	44, 129
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	22, 110, 468, 510
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 402, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 574
Bse118I	RCCGGY	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	22, 110, 468, 510
BseGI	GGATG	2 cut(s)	511, 520
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	439, 574
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	110, 114, 488
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	27, 467
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	83, 132
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	439, 574
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	27, 467
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	3, 533
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	5 cut(s)	18, 98, 126, 440, 555
BspANI	GGCC	2 cut(s)	27, 467
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	130, 416
BspQI	GCTCTTC	2 cut(s)	347, 545
BspT107I	GGYRCC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	22, 110, 468, 510
BssMI	GATC	2 cut(s)	3, 533
BssNI	GRCGYC	2 cut(s)	44, 129
BssT1I	CCWWGG	2 cut(s)	468, 510
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	3 cut(s)	234, 347, 545
BstACI	GRCGYC	2 cut(s)	44, 129
BstAPI	GCANNNNNTGC	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	133
BstDSI	CCRYGG	2 cut(s)	22, 510
BstF5I	GGATG	2 cut(s)	511, 520
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	3 cut(s)	102, 131, 410
BstKTI	GATC	2 cut(s)	6, 536
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	3, 533
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 99, 132, 451, 473, 564
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	3 cut(s)	110, 114, 488
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	27, 467
BtgI	CCRYGG	2 cut(s)	22, 510
BtsCI	GGATG	2 cut(s)	511, 520
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	3 cut(s)	102, 131, 410
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	26, 415, 465
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	511
CviJI	RGCY	7 cut(s)	27, 93, 105, 123, 163, 445, 467
CviKI_1	RGCY	7 cut(s)	27, 93, 105, 123, 163, 445, 467
CviQI	GTAC	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	2 cut(s)	5, 535
DpnII	GATC	2 cut(s)	3, 533
Eam1104I	CTCTTC	3 cut(s)	234, 347, 545
EarI	CTCTTC	3 cut(s)	234, 347, 545
Eco130I	CCWWGG	2 cut(s)	468, 510
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	468, 510
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	468, 510
FaeI	CATG	1 cut(s)	514
FaiI	YATR	1 cut(s)	512
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	510
FauI	CCCGC	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	5 cut(s)	103, 124, 127, 477, 556
FokI	GGATG	2 cut(s)	518, 527
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	103, 124, 127, 477, 556
FspBI	CTAG	3 cut(s)	542, 573, 593
FspI	TGCGCA	1 cut(s)	409
GlaI	GCGC	3 cut(s)	101, 130, 409
GluI	GCNGC	5 cut(s)	103, 124, 127, 477, 556
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	27, 467
HapII	CCGG	2 cut(s)	83, 132
HhaI	GCGC	3 cut(s)	102, 131, 410
Hin1I	GRCGYC	2 cut(s)	44, 129
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	3 cut(s)	100, 129, 408
HinP1I	GCGC	3 cut(s)	100, 129, 408
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	83, 132
HphI	GGTGA	5 cut(s)	7, 39, 99, 208, 502
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	212, 290
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	5 cut(s)	43, 46, 140, 158, 161
HpyAV	CCTTC	3 cut(s)	244, 329, 465
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	38, 44
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 99, 132, 451, 473, 564
HpySE526I	ACGT	2 cut(s)	38, 44
Hsp92I	GRCGYC	2 cut(s)	44, 129
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	3 cut(s)	100, 129, 408
KasI	GGCGCC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 533
LguI	GCTCTTC	2 cut(s)	347, 545
LpnPI	CCDG	3 cut(s)	96, 145, 522
Lsp1109I	GCAGC	3 cut(s)	110, 114, 488
LweI	GCATC	2 cut(s)	427, 496
MaeI	CTAG	3 cut(s)	542, 573, 593
MaeII	ACGT	2 cut(s)	38, 44
MaeIII	GTNAC	2 cut(s)	45, 490
MalI	GATC	2 cut(s)	5, 535
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	2 cut(s)	3, 533
MboII	GAAGA	7 cut(s)	4, 248, 251, 287, 364, 536, 562
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	5 cut(s)	67, 143, 165, 217, 562
Mly113I	GGCGCC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	244
MreI	CGCCGGCG	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	131
MspI	CCGG	2 cut(s)	83, 132
MunI	CAATTG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	6 cut(s)	79, 99, 132, 451, 473, 564
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	2 cut(s)	3, 533
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	2 cut(s)	130, 416
NmuCI	GTSAC	2 cut(s)	45, 490
NsbI	TGCGCA	1 cut(s)	409
PciSI	GCTCTTC	2 cut(s)	347, 545
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 86
PdiI	GCCGGC	1 cut(s)	133
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	104, 125, 128, 478, 557
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	130, 416
PspPI	GGNCC	3 cut(s)	26, 415, 465
PspPPI	RGGWCCY	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	533
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	40
SapI	GCTCTTC	2 cut(s)	347, 545
SatI	GCNGC	5 cut(s)	103, 124, 127, 477, 556
Sau3AI	GATC	2 cut(s)	3, 533
Sau96I	GGNCC	3 cut(s)	26, 415, 465
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	9 cut(s)	41, 47, 107, 112, 125, 198, 255, 340, 420
SfaNI	GCATC	2 cut(s)	427, 496
SfoI	GGCGCC	1 cut(s)	130
SgrAI	CRCCGGYG	1 cut(s)	131
SgrDI	CGTCGACG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	415
Sse9I	AATT	5 cut(s)	67, 143, 165, 217, 562
SsiI	CCGC	5 cut(s)	18, 98, 126, 440, 555
SspDI	GGCGCC	1 cut(s)	128
SspMI	CTAG	3 cut(s)	542, 573, 593
StyI	CCWWGG	2 cut(s)	468, 510
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	41, 47
TaqI	TCGA	4 cut(s)	41, 89, 211, 333
TasI	AATT	5 cut(s)	67, 143, 165, 217, 562
TauI	GCSGC	2 cut(s)	129, 558
TseFI	GTSAC	2 cut(s)	45, 490
TseI	GCWGC	3 cut(s)	102, 123, 476
Tsp45I	GTSAC	2 cut(s)	45, 490
TspDTI	ATGAA	2 cut(s)	288, 318
Tth111I	GACNNNGTC	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	3 cut(s)	67, 143, 217
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	3 cut(s)	542, 573, 593
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.