Rh7CG412500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003285
Physical Location & Seq
Forward (+)
52959344 .. 52959652
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG412500.1

Sequence Viewer

Length: 309 bp
ATGGCCGCTTCCTCCTACCAAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACAACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACAGCCTCTACGGCAATGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACATCGGAGTCGAGCCCACTGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACCATTACAAAGGGAGGCGACTTGGTGAATGTGTATGTGGGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.28

Weight (kDa)

6.95

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 153, 249
Acc16I TGCGCA 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 147
AciI CCGC 3 cut(s) 6, 66, 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 3 cut(s) 150, 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 211, 229
AluI AGCT 2 cut(s) 211, 229
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 2 cut(s) 37, 95
AsuHPI GGTGA 5 cut(s) 103, 112, 145, 205, 296
AvaII GGWCC 2 cut(s) 37, 95
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 70, 122, 164
BceAI ACGGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BclI TGATCA 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BmiI GGNNCC 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 3 cut(s) 150, 235, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 113
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 3 cut(s) 6, 66, 123
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 3 cut(s) 150, 235, 246
BstACI GRCGYC 3 cut(s) 150, 235, 246
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 138, 205
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 37, 95
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 106
CviJI RGCY 5 cut(s) 5, 132, 199, 211, 229
CviKI_1 RGCY 5 cut(s) 5, 132, 199, 211, 229
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 217
DinI GGCGCC 1 cut(s) 236
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 37, 95
EcoT38I GRGCYC 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 51, 58, 107, 295
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 6, 209
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 2 cut(s) 6, 209
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 238
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 3 cut(s) 150, 235, 246
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 73, 192
HpaII CCGG 1 cut(s) 238
HphI GGTGA 5 cut(s) 103, 112, 145, 205, 296
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 191, 220, 251
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 3 cut(s) 152, 248, 251
HpyCH4IV ACGT 2 cut(s) 150, 246
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 205
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 2 cut(s) 150, 246
Hsp92I GRCGYC 3 cut(s) 150, 235, 246
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 20, 78, 217, 251
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 2 cut(s) 150, 246
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 9 cut(s) 22, 50, 79, 108, 143, 191, 226, 267, 295
MspI CCGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 138, 205
NarI GGCGCC 1 cut(s) 235
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 151
NsbI TGCGCA 1 cut(s) 207
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 37, 95
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 153, 213, 218, 231, 249
SfoI GGCGCC 1 cut(s) 236
SinI GGWCC 2 cut(s) 37, 95
Sse9I AATT 1 cut(s) 173
SsiI CCGC 3 cut(s) 6, 66, 123
SspDI GGCGCC 1 cut(s) 234
TaiI ACGT 2 cut(s) 153, 249
TaqI TCGA 3 cut(s) 71, 147, 195
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 147
ZraI GACGTC 2 cut(s) 151, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.