RLG00000018740

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003285
Physical Location & Seq
Forward (+)
34881339 .. 34882239
901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018740

Sequence Viewer

Length: 720 bp
ATGATCACAATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAAACTTCAAGCTCTGGCGTCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGAGGGCGACGACGAGCCAATTGACTGTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGCAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGCAGCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGAGGAGGAGGATGAGAGAGAGAGTGATGAGGAGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGAAGGAGGGCAATGATGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTAATGGAAGTGGTGATGAGGAGATTGACCGTGAAAGTTTTCAGGTGGGATTCCAATTTTGGGAGTGGAGATGGGAGATTGAAATTTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

240

Amino Acids

26.09

Weight (kDa)

4.05

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 48, 144
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 101
AciI CCGC 4 cut(s) 18, 99, 551, 557
AcsI RAATTY 3 cut(s) 68, 328, 708
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 3 cut(s) 45, 130, 141
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 4 cut(s) 121, 347, 593, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 106, 124, 471
AluI AGCT 3 cut(s) 106, 124, 471
Alw26I GTCTC 1 cut(s) 428
AoxI GGCC 2 cut(s) 25, 250
ApeKI GCWGC 2 cut(s) 103, 449
ApoI RAATTY 3 cut(s) 68, 328, 708
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 7 cut(s) 7, 40, 100, 238, 313, 611, 650
AvaII GGWCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 115, 461
BccI CCATC 3 cut(s) 59, 524, 690
BceAI ACGGC 2 cut(s) 40, 49
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 474
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 104, 450
BlsI GCNGC 2 cut(s) 105, 451
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 3 cut(s) 45, 130, 141
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse3DI GCAATG 1 cut(s) 577
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 499, 523, 535
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 7 cut(s) 349, 497, 500, 503, 527, 536, 659
BseXI GCAGC 2 cut(s) 115, 461
BsgI GTGCAG 1 cut(s) 633
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 2 cut(s) 27, 252
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 685
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 2 cut(s) 27, 252
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 4 cut(s) 18, 99, 551, 557
BspANI GGCC 2 cut(s) 27, 252
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 3 cut(s) 45, 130, 141
Bst4CI ACNGT 2 cut(s) 203, 656
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 3 cut(s) 45, 130, 141
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 499, 523, 535
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 33, 80, 100
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 115, 461
BsuRI GGCC 2 cut(s) 27, 252
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 499, 523, 535
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 267
CseI GACGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 9 cut(s) 27, 94, 106, 124, 193, 252, 289, 471, 581
CviKI_1 RGCY 9 cut(s) 27, 94, 106, 124, 193, 252, 289, 471, 581
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 2 cut(s) 566, 572
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 96
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 104, 450
FokI GGATG 3 cut(s) 506, 530, 542
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 104, 450
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 104, 450
HaeIII GGCC 2 cut(s) 27, 252
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 3 cut(s) 45, 130, 141
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 87, 675
HpaII CCGG 1 cut(s) 84
HphI GGTGA 7 cut(s) 7, 40, 100, 238, 313, 611, 650
Hpy166II GTNNAC 3 cut(s) 43, 304, 587
Hpy188I TCNGA 5 cut(s) 146, 235, 271, 316, 325
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 3 cut(s) 43, 304, 587
Hpy99I CGWCG 7 cut(s) 44, 47, 135, 143, 146, 188, 191
HpyAV CCTTC 6 cut(s) 355, 520, 530, 541, 556, 590
HpyCH4III ACNGT 2 cut(s) 203, 656
HpyCH4IV ACGT 4 cut(s) 39, 45, 141, 306
HpyCH4V TGCA 3 cut(s) 152, 377, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 80, 100
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 4 cut(s) 39, 45, 141, 306
Hsp92I GRCGYC 3 cut(s) 45, 130, 141
HspAI GCGC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 97, 112, 363, 653
Lsp1109I GCAGC 2 cut(s) 115, 461
LweI GCATC 1 cut(s) 461
MaeI CTAG 1 cut(s) 474
MaeII ACGT 4 cut(s) 39, 45, 141, 306
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 7 cut(s) 4, 359, 362, 398, 447, 450, 605
MfeI CAATTG 2 cut(s) 195, 276
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 6 cut(s) 68, 195, 276, 328, 680, 708
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 124, 294
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 84
MunI CAATTG 2 cut(s) 195, 276
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 33, 80, 100
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 1 cut(s) 675
PkrI GCNGC 2 cut(s) 105, 451
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 104, 450
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 461
SgrDI CGTCGACG 1 cut(s) 41
SinI GGWCC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 6 cut(s) 68, 195, 276, 328, 680, 708
SsiI CCGC 4 cut(s) 18, 99, 551, 557
SspMI CTAG 1 cut(s) 474
TaaI ACNGT 2 cut(s) 203, 656
TaiI ACGT 4 cut(s) 42, 48, 144, 309
TaqI TCGA 4 cut(s) 42, 90, 444, 461
TasI AATT 6 cut(s) 68, 195, 276, 328, 680, 708
TfiI GAWTC 1 cut(s) 675
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 103, 449
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 399, 429
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 3 cut(s) 68, 328, 708
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 1 cut(s) 474
ZraI GACGTC 2 cut(s) 46, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.