Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Forward (+)

61913721 .. 61914053

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG455300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCCGCTTCCTCCTACCCGGAAACCCTAGATCTGGTCCTCACACATCGTATCTCATGCCCATCCGCCTCGAATCCACCAACTACTTCATCTGGTCCTCATCTCATGACCACCATCTTCACCGCCCACGGCCTCCGCGGCTACGTCGACGACACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGGCGAACCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACGTCGGAGTCAAGGTCTTCATCAACGCCACGCTGTCCTCATTGGCGTTGTCGCACATCATCTGCTCCGACACGGCCATGGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs rve

Protein Analysis

110

Amino Acids

11.84

Weight (kDa)

6.0

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	138, 206
AciI	CCGC	6 cut(s)	6, 66, 123, 136, 138, 204
AcoI	YGGCCR	2 cut(s)	3, 318
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	235, 246
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	226
AluBI	AGCT	2 cut(s)	211, 229
AluI	AGCT	2 cut(s)	211, 229
AoxI	GGCC	3 cut(s)	3, 130, 318
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	208, 237
AspS9I	GGNCC	3 cut(s)	37, 95, 325
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	112, 205
AvaII	GGWCC	3 cut(s)	37, 95, 325
BanI	GGYRCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	3 cut(s)	70, 122, 164
BceAI	ACGGC	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	138
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	3 cut(s)	6, 139, 209
BlsI	GCNGC	3 cut(s)	7, 140, 210
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	3 cut(s)	37, 95, 325
BmgT120I	GGNCC	3 cut(s)	37, 95, 325
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	235, 246
BsaJI	CCNNGG	3 cut(s)	127, 136, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	127, 136, 321
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	138, 206
BshFI	GGCC	3 cut(s)	5, 132, 320
BshNI	GGYRCC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	20, 189, 238
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	3 cut(s)	5, 132, 320
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	6 cut(s)	6, 66, 123, 136, 138, 204
BspANI	GGCC	3 cut(s)	5, 132, 320
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	2 cut(s)	138, 206
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	3 cut(s)	127, 136, 321
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	2 cut(s)	235, 246
BssT1I	CCWWGG	1 cut(s)	321
BstACI	GRCGYC	2 cut(s)	235, 246
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	3 cut(s)	127, 136, 321
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	2 cut(s)	138, 206
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	208, 237
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 185
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	329
BstUI	CGCG	2 cut(s)	138, 206
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	3 cut(s)	5, 132, 320
BtgI	CCRYGG	3 cut(s)	127, 136, 321
BtsCI	GGATG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	2 cut(s)	208, 237
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	37, 95, 325
Cfr42I	CCGCGG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	57, 106, 322
CviJI	RGCY	6 cut(s)	5, 132, 141, 211, 229, 320
CviKI_1	RGCY	6 cut(s)	5, 132, 141, 211, 229, 320
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	217
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	3, 318
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	3 cut(s)	37, 95, 325
EcoT14I	CCWWGG	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	60, 109, 325
FaiI	YATR	3 cut(s)	58, 107, 323
FatI	CATG	3 cut(s)	56, 105, 321
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	6, 139, 209
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	6, 139, 209
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	2 cut(s)	207, 236
GluI	GCNGC	3 cut(s)	6, 139, 209
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	3 cut(s)	5, 132, 320
HapII	CCGG	3 cut(s)	20, 189, 238
HhaI	GCGC	2 cut(s)	208, 237
Hin1I	GRCGYC	2 cut(s)	235, 246
Hin1II	CATG	3 cut(s)	60, 109, 325
Hin6I	GCGC	2 cut(s)	206, 235
HinP1I	GCGC	2 cut(s)	206, 235
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	73, 252
HpaII	CCGG	3 cut(s)	20, 189, 238
HphI	GGTGA	2 cut(s)	112, 205
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	220, 251, 313
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	4 cut(s)	149, 152, 248, 251
HpyCH4IV	ACGT	2 cut(s)	144, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 185
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	2 cut(s)	144, 246
Hsp92I	GRCGYC	2 cut(s)	235, 246
Hsp92II	CATG	3 cut(s)	60, 109, 325
HspAI	GCGC	2 cut(s)	206, 235
KasI	GGCGCC	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	6 cut(s)	20, 33, 78, 202, 217, 251
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	144, 246
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	109, 253
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	9 cut(s)	22, 50, 79, 108, 143, 185, 191, 226, 292
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	3 cut(s)	20, 189, 238
MspR9I	CCNGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	138, 206
MwoI	GCNNNNNNNGC	2 cut(s)	138, 185
NarI	GGCGCC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	60, 109, 325
NlaIV	GGNNCC	1 cut(s)	236
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	7, 140, 210
PleI	GAGTC	1 cut(s)	260
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	37, 95, 325
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	320
SacII	CCGCGG	1 cut(s)	139
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	3 cut(s)	6, 139, 209
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	3 cut(s)	37, 95, 325
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	7 cut(s)	147, 213, 218, 231, 249, 261, 330
SfcI	CTRYAG	1 cut(s)	329
SfoI	GGCGCC	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	139
SgrBI	CCGCGG	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	37, 95, 325
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	6 cut(s)	6, 66, 123, 136, 138, 204
SspDI	GGCGCC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	321
TaiI	ACGT	2 cut(s)	147, 249
TaqI	TCGA	2 cut(s)	71, 147
TasI	AATT	1 cut(s)	173
TauI	GCSGC	2 cut(s)	8, 141
TfiI	GAWTC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	78, 253
VpaK11BI	GGWCC	3 cut(s)	37, 95, 325
XapI	RAATTY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.