Rh1CG401900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003285
Physical Location & Seq
Reverse (-)
66780050 .. 66780253
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG401900.1

Sequence Viewer

Length: 204 bp
ATGATCACCATCTTCACTGCCCATGGCCTCTACGACAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCATCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTAGTGAATGTGTATGTGGGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.56

Weight (kDa)

4.88

Isoelectric Point (pI)

25.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 48, 144
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 101
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 2 cut(s) 45, 141
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 106, 124
AluI AGCT 2 cut(s) 106, 124
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 40, 100
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 17, 59
BclI TGATCA 1 cut(s) 3
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmsI GCATC 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 45, 141
BsaJI CCNNGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 84
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 45, 141
BssT1I CCWWGG 1 cut(s) 22
BstACI GRCGYC 2 cut(s) 45, 141
BstDEI CTNAG 2 cut(s) 112, 176
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 80, 100
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 23
CviJI RGCY 4 cut(s) 27, 94, 106, 124
CviKI_1 RGCY 4 cut(s) 27, 94, 106, 124
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 2 cut(s) 112, 176
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 190
FatI CATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 84
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 2 cut(s) 45, 141
Hin1II CATG 1 cut(s) 26
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 40, 100
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 115, 146
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 4 cut(s) 44, 47, 143, 146
HpyCH4IV ACGT 3 cut(s) 39, 45, 141
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 100
HpyF3I CTNAG 2 cut(s) 112, 176
HpySE526I ACGT 3 cut(s) 39, 45, 141
Hsp92I GRCGYC 2 cut(s) 45, 141
Hsp92II CATG 1 cut(s) 26
HspAI GCGC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 97, 112
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 139
MaeII ACGT 3 cut(s) 39, 45, 141
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 5 cut(s) 38, 86, 121, 162, 190
MspI CCGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 80, 100
NcoI CCATGG 1 cut(s) 22
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 42, 48, 108, 113, 126, 144
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 7 cut(s) 35, 74, 96, 103, 112, 133, 139
SgrDI CGTCGACG 1 cut(s) 41
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 99
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 3 cut(s) 42, 48, 144
TaqI TCGA 2 cut(s) 42, 90
TasI AATT 1 cut(s) 68
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 1 cut(s) 22
Tth111I GACNNNGTC 1 cut(s) 38
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 42
ZraI GACGTC 2 cut(s) 46, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.