Rh7BG044900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003285
Physical Location & Seq
Reverse (-)
2804351 .. 2805001
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG044900.1

Sequence Viewer

Length: 651 bp
ATGGCCGCTTCCTCCTACCCGGAAACCCCAGATCTGGTCCTCACACATCGTATCTCATGCCCATCCGCCTCGAATCCACCAACTACTTCATTAGGTCCTCATCTCATGACCACCATCTTCACCGCCCACGGCCTCCACGGCTACGTCGACGGCACCATCAAAATCCCTGACAAATTCGCCCTCAACGCCGGAGGCGAACCCACCGCGCAACTCACCTCAGACTTCAAGCTCTGGCGCCGATACGACGCCGGAGTCAAGGTCGTCATCAACGCCACGCTGTCCTCGTCGGCGCTGCCACACATCATCGGCTCCGACACGGCCAGGGACCTGTGGCTAACGCTAGAGCGGCGGTTCATGTCGATGTCGAATTTCAACATCGTGAAGTACAGGTCTGATCTGCAGACAATTACAAAGGGAGGCGACTCGGTGAATGTGTATGTGGGGAGGATTGATGAGATAAGGACGAAGCTGGCGGGGTTTTCGGTGATGGTGGATGACGCGGAGATGATTGGGCATGCTCTGAGGGGGTTGTCGGAGGATTATGAGGCGTTTGGGAACTCGATTACGGCGAGGAATGAGCCACTGCTGTTGAATGAGTTTTATGTGCTGTTGCTGGCGGAGGAGACTTCTATTTTGGCAGGGAGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

216

Amino Acids

23.58

Weight (kDa)

5.47

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 36 - 209 6.8e-16 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AccB1I GGYRCC 2 cut(s) 152, 234
AccBSI CCGCTC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 206, 500
AciI CCGC 9 cut(s) 6, 66, 123, 204, 346, 349, 473, 500, 617
AcoI YGGCCR 2 cut(s) 3, 318
AcsI RAATTY 2 cut(s) 173, 367
AcyI GRCGYC 2 cut(s) 235, 246
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 226, 373, 592
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 229, 469
AluI AGCT 2 cut(s) 229, 469
Alw26I GTCTC 1 cut(s) 617
AoxI GGCC 3 cut(s) 3, 130, 318
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 2 cut(s) 173, 367
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
AspLEI GCGC 3 cut(s) 208, 237, 292
AspS9I GGNCC 3 cut(s) 37, 95, 325
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 112, 205, 439, 496
AvaII GGWCC 3 cut(s) 37, 95, 325
BanI GGYRCC 2 cut(s) 152, 234
BbvI GCAGC 1 cut(s) 279
BccI CCATC 4 cut(s) 70, 122, 164, 481
BceAI ACGGC 5 cut(s) 145, 154, 166, 333, 582
BciT130I CCWGG 1 cut(s) 322
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 2 cut(s) 238, 293
BglI GCCNNNNNGGC 1 cut(s) 138
BglII AGATCT 1 cut(s) 31
BisI GCNGC 3 cut(s) 6, 293, 347
BlsI GCNGC 3 cut(s) 7, 294, 348
Bme1390I CCNGG 2 cut(s) 20, 322
Bme18I GGWCC 3 cut(s) 37, 95, 325
BmgT120I GGNCC 3 cut(s) 37, 95, 325
BmiI GGNNCC 4 cut(s) 154, 236, 310, 326
BmrFI CCNGG 2 cut(s) 20, 322
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 2 cut(s) 235, 246
BsaJI CCNNGG 3 cut(s) 127, 136, 321
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 127, 136, 321
BseGI GGATG 2 cut(s) 62, 499
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 231, 512
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 1 cut(s) 279
Bsh1236I CGCG 2 cut(s) 206, 500
BshFI GGCC 3 cut(s) 5, 132, 320
BshNI GGYRCC 2 cut(s) 152, 234
BsiSI CCGG 3 cut(s) 20, 189, 249
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 3 cut(s) 5, 132, 320
Bsp143I GATC 2 cut(s) 31, 394
BspACI CCGC 9 cut(s) 6, 66, 123, 204, 346, 349, 473, 500, 617
BspANI GGCC 3 cut(s) 5, 132, 320
BspCNI CTCAG 2 cut(s) 230, 513
BspFNI CGCG 2 cut(s) 206, 500
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 154, 236, 310, 326
BspMAI CTGCAG 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 152, 234
BsrBI CCGCTC 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 127, 136, 321
BssMI GATC 2 cut(s) 31, 394
BssNI GRCGYC 2 cut(s) 235, 246
Bst2UI CCWGG 1 cut(s) 322
BstACI GRCGYC 2 cut(s) 235, 246
BstC8I GCNNGC 3 cut(s) 471, 516, 615
BstDEI CTNAG 2 cut(s) 217, 521
BstDSI CCRYGG 2 cut(s) 127, 136
BstF5I GGATG 2 cut(s) 62, 499
BstFNI CGCG 2 cut(s) 206, 500
BstH2I RGCGCY 2 cut(s) 238, 293
BstHHI GCGC 3 cut(s) 208, 237, 292
BstKTI GATC 2 cut(s) 34, 397
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 31, 394
BstMWI GCNNNNNNNGC 3 cut(s) 138, 185, 346
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 18, 320
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 2 cut(s) 206, 500
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 3 cut(s) 5, 132, 320
BtgI CCRYGG 2 cut(s) 127, 136
BtsCI GGATG 2 cut(s) 62, 499
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 1 cut(s) 581
Cac8I GCNNGC 3 cut(s) 471, 516, 615
CciI TCATGA 1 cut(s) 105
CfoI GCGC 3 cut(s) 208, 237, 292
Cfr13I GGNCC 3 cut(s) 37, 95, 325
CseI GACGC 2 cut(s) 254, 506
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 4 cut(s) 57, 106, 355, 515
CviJI RGCY 9 cut(s) 5, 132, 141, 229, 309, 320, 334, 469, 580
CviKI_1 RGCY 9 cut(s) 5, 132, 141, 229, 309, 320, 334, 469, 580
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 217, 521
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 33, 396
DpnII GATC 2 cut(s) 31, 394
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 3, 318
EciI GGCGGA 2 cut(s) 55, 632
Eco47I GGWCC 3 cut(s) 37, 95, 325
EcoO109I RGGNCCY 2 cut(s) 95, 325
EcoRII CCWGG 1 cut(s) 320
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 4 cut(s) 60, 109, 358, 518
FaiI YATR 7 cut(s) 58, 107, 356, 438, 516, 543, 603
FaqI GGGAC 1 cut(s) 338
FatI CATG 4 cut(s) 56, 105, 354, 514
FauI CCCGC 1 cut(s) 466
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 6, 293, 347
FokI GGATG 2 cut(s) 49, 506
Fsp4HI GCNGC 3 cut(s) 6, 293, 347
FspBI CTAG 1 cut(s) 341
GlaI GCGC 3 cut(s) 207, 236, 291
GluI GCNGC 3 cut(s) 6, 293, 347
HaeII RGCGCY 2 cut(s) 238, 293
HaeIII GGCC 3 cut(s) 5, 132, 320
HapII CCGG 3 cut(s) 20, 189, 249
HgaI GACGC 2 cut(s) 254, 506
HhaI GCGC 3 cut(s) 208, 237, 292
Hin1I GRCGYC 2 cut(s) 235, 246
Hin1II CATG 4 cut(s) 60, 109, 358, 518
Hin6I GCGC 3 cut(s) 206, 235, 290
HinP1I GCGC 3 cut(s) 206, 235, 290
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 4 cut(s) 73, 252, 422, 643
HpaII CCGG 3 cut(s) 20, 189, 249
HphI GGTGA 4 cut(s) 112, 205, 439, 496
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 220, 313, 394, 522, 535
Hpy188III TCNNGA 2 cut(s) 106, 379
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 4 cut(s) 149, 152, 248, 289
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 185, 346
HpyF3I CTNAG 2 cut(s) 217, 521
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 2 cut(s) 235, 246
Hsp92II CATG 4 cut(s) 60, 109, 358, 518
HspAI GCGC 3 cut(s) 206, 235, 290
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 31, 394
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 144
MalI GATC 2 cut(s) 33, 396
MbiI CCGCTC 1 cut(s) 346
MboI GATC 2 cut(s) 31, 394
MboII GAAGA 1 cut(s) 109
MflI RGATCY 1 cut(s) 31
MluCI AATT 3 cut(s) 173, 367, 405
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 2 cut(s) 261, 416
MmeI TCCRAC 2 cut(s) 336, 513
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 3 cut(s) 20, 189, 249
MspR9I CCNGG 2 cut(s) 20, 322
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 2 cut(s) 206, 500
MwoI GCNNNNNNNGC 3 cut(s) 138, 185, 346
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 20
NdeII GATC 2 cut(s) 31, 394
NlaIII CATG 4 cut(s) 60, 109, 358, 518
NlaIV GGNNCC 4 cut(s) 154, 236, 310, 326
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 192, 281, 566
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 7, 294, 348
PleI GAGTC 2 cut(s) 260, 416
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 2 cut(s) 260, 416
PpuMI RGGWCCY 2 cut(s) 95, 325
Psp5II RGGWCCY 2 cut(s) 95, 325
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 4 cut(s) 154, 236, 310, 326
PspPI GGNCC 3 cut(s) 37, 95, 325
PspPPI RGGWCCY 2 cut(s) 95, 325
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 359
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 3 cut(s) 6, 293, 347
Sau3AI GATC 2 cut(s) 31, 394
Sau96I GGNCC 3 cut(s) 37, 95, 325
SchI GAGTC 2 cut(s) 261, 416
ScrFI CCNGG 2 cut(s) 20, 322
SetI ASST 8 cut(s) 97, 147, 218, 231, 261, 330, 392, 471
SfcI CTRYAG 1 cut(s) 398
SfoI GGCGCC 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 3 cut(s) 37, 95, 325
SmiMI CAYNNNNRTG 1 cut(s) 359
SphI GCATGC 1 cut(s) 518
Sse9I AATT 3 cut(s) 173, 367, 405
SsiI CCGC 9 cut(s) 6, 66, 123, 204, 346, 349, 473, 500, 617
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 18, 320
TaiI ACGT 1 cut(s) 147
TaqI TCGA 5 cut(s) 71, 147, 359, 365, 560
TasI AATT 3 cut(s) 173, 367, 405
TatI WGTACW 1 cut(s) 384
TauI GCSGC 2 cut(s) 8, 349
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 588
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 78, 343
TspRI CASTG 1 cut(s) 588
VpaK11BI GGWCC 3 cut(s) 37, 95, 325
XapI RAATTY 2 cut(s) 173, 367
XceI RCATGY 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.