Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

56865470 .. 56866484

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCAGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCATACTTCAAGCTCTGGCGCCGGTACGACGTTGGATTTGCAGACGATTACAAAGGGAGGCGACTTGGTGAATGTGGCAACGACAAATTTGAGGGCGACGATGAGCCAATTGACTGTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATAGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAACATGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGTGTGAAGAGCAAAATGGAGAGTGGGATTGAGAGCGAAAGTTCGGATTTGGAGAGAGTGAGAGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGAAGGAGGGCAATGAGGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTAATGGAAGTGGTGATGAGGAGATTGACCGTGAAAGTTTTCAGGTGGGATTCCAATTTTGGGAGTGGAGATGGGAGATTGAAATTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

280

Amino Acids

30.48

Weight (kDa)

4.38

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	206
AciI	CCGC	4 cut(s)	66, 123, 204, 677
AcsI	RAATTY	4 cut(s)	173, 302, 457, 828
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	2 cut(s)	150, 235
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	34, 805
AgsI	TTSAA	4 cut(s)	226, 476, 713, 827
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	3 cut(s)	8, 211, 229
AluI	AGCT	3 cut(s)	8, 211, 229
Alw26I	GTCTC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	130, 379
ApeKI	GCWGC	2 cut(s)	5, 208
ApoI	RAATTY	4 cut(s)	173, 302, 457, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	208, 237
AspS9I	GGNCC	3 cut(s)	37, 95, 396
AsuHPI	GGTGA	9 cut(s)	103, 112, 145, 205, 296, 367, 442, 731, 770
AvaII	GGWCC	3 cut(s)	37, 95, 396
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	17, 220
BccI	CCATC	5 cut(s)	70, 122, 164, 650, 810
BceAI	ACGGC	2 cut(s)	145, 154
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	6, 209
BlsI	GCNGC	2 cut(s)	7, 210
Bme18I	GGWCC	3 cut(s)	37, 95, 396
BmgT120I	GGNCC	3 cut(s)	37, 95, 396
BmiI	GGNNCC	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	150, 235
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 805
Bse118I	RCCGGY	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	697
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	62, 661
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	34, 805
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	3 cut(s)	478, 710, 779
BseXI	GCAGC	2 cut(s)	17, 220
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	132, 381
BshNI	GGYRCC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	189, 238
BslI	CCNNNNNNNGG	2 cut(s)	34, 805
BsmAI	GTCTC	1 cut(s)	557
BsnI	GGCC	2 cut(s)	132, 381
Bso31I	GGTCTC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	66, 123, 204, 677
BspANI	GGCC	2 cut(s)	132, 381
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	2 cut(s)	150, 235
Bst4CI	ACNGT	2 cut(s)	332, 776
Bst6I	CTCTTC	2 cut(s)	474, 587
BstACI	GRCGYC	2 cut(s)	150, 235
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	62, 661
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	208, 237
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	17, 220
BsuRI	GGCC	2 cut(s)	132, 381
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	62, 661
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	2 cut(s)	208, 237
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	37, 95, 396
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	106, 436
CviJI	RGCY	9 cut(s)	8, 132, 199, 211, 229, 322, 381, 418, 701
CviKI_1	RGCY	9 cut(s)	8, 132, 199, 211, 229, 322, 381, 418, 701
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	236
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	474, 587
EarI	CTCTTC	2 cut(s)	474, 587
EciI	GGCGGA	2 cut(s)	55, 692
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	3 cut(s)	37, 95, 396
Eco57I	CTGAAG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
FaeI	CATG	2 cut(s)	109, 439
FaiI	YATR	5 cut(s)	51, 58, 107, 220, 437
FatI	CATG	2 cut(s)	105, 435
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	6, 209
FokI	GGATG	2 cut(s)	49, 668
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	6, 209
GlaI	GCGC	2 cut(s)	207, 236
GluI	GCNGC	2 cut(s)	6, 209
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	132, 381
HapII	CCGG	2 cut(s)	189, 238
HhaI	GCGC	2 cut(s)	208, 237
Hin1I	GRCGYC	2 cut(s)	150, 235
Hin1II	CATG	2 cut(s)	109, 439
Hin6I	GCGC	2 cut(s)	206, 235
HinP1I	GCGC	2 cut(s)	206, 235
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	73, 192, 795
HpaII	CCGG	2 cut(s)	189, 238
HphI	GGTGA	9 cut(s)	103, 112, 145, 205, 296, 367, 442, 731, 770
Hpy166II	GTNNAC	3 cut(s)	148, 433, 707
Hpy188I	TCNGA	5 cut(s)	364, 400, 445, 454, 631
Hpy188III	TCNNGA	2 cut(s)	106, 530
Hpy8I	GTNNAC	3 cut(s)	148, 433, 707
Hpy99I	CGWCG	4 cut(s)	149, 152, 248, 317
HpyAV	CCTTC	7 cut(s)	484, 569, 646, 656, 667, 676, 710
HpyCH4III	ACNGT	2 cut(s)	332, 776
HpyCH4IV	ACGT	3 cut(s)	144, 150, 246
HpyCH4V	TGCA	2 cut(s)	257, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	3 cut(s)	144, 150, 246
Hsp92I	GRCGYC	2 cut(s)	150, 235
Hsp92II	CATG	2 cut(s)	109, 439
HspAI	GCGC	2 cut(s)	206, 235
KasI	GGCGCC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LguI	GCTCTTC	1 cut(s)	587
LpnPI	CCDG	6 cut(s)	20, 78, 202, 217, 251, 773
Lsp1109I	GCAGC	2 cut(s)	17, 220
MaeII	ACGT	3 cut(s)	144, 150, 246
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	6 cut(s)	109, 488, 491, 527, 604, 725
MfeI	CAATTG	2 cut(s)	324, 405
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	7 cut(s)	173, 302, 324, 405, 457, 800, 828
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	3 cut(s)	229, 423, 484
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	1 cut(s)	390
MspI	CCGG	2 cut(s)	189, 238
MunI	CAATTG	2 cut(s)	324, 405
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	3 cut(s)	138, 185, 205
NarI	GGCGCC	1 cut(s)	235
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	109, 439
NlaIV	GGNNCC	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 192
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	2 cut(s)	73, 795
PkrI	GCNGC	2 cut(s)	7, 210
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	37, 95, 396
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	2 cut(s)	6, 209
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	3 cut(s)	37, 95, 396
SchI	GAGTC	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	236
SgrDI	CGTCGACG	1 cut(s)	146
SinI	GGWCC	3 cut(s)	37, 95, 396
Sse9I	AATT	7 cut(s)	173, 302, 324, 405, 457, 800, 828
SsiI	CCGC	4 cut(s)	66, 123, 204, 677
SspDI	GGCGCC	1 cut(s)	234
TaaI	ACNGT	2 cut(s)	332, 776
TaiI	ACGT	3 cut(s)	147, 153, 249
TaqI	TCGA	4 cut(s)	71, 147, 195, 573
TasI	AATT	7 cut(s)	173, 302, 324, 405, 457, 800, 828
TfiI	GAWTC	2 cut(s)	73, 795
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	5, 208
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	452, 528, 558
VpaK11BI	GGWCC	3 cut(s)	37, 95, 396
XapI	RAATTY	4 cut(s)	173, 302, 457, 828
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	783
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.