Rh1AG059900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003285
Physical Location & Seq
Reverse (-)
9761170 .. 9761448
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG059900.1

Sequence Viewer

Length: 279 bp
ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAATGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAACCCACCGCGCAGCTCACCTCATACTTCAAGCTCTGGCGTCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

9.01

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 153, 249
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 206
AciI CCGC 4 cut(s) 6, 66, 123, 204
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 3 cut(s) 150, 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 211, 229
AluI AGCT 2 cut(s) 211, 229
AoxI GGCC 2 cut(s) 3, 130
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 37, 95
AsuHPI GGTGA 4 cut(s) 103, 112, 145, 205
AvaII GGWCC 2 cut(s) 37, 95
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 70, 122, 164
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 3 cut(s) 150, 235, 246
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 5, 132
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 5, 132
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 4 cut(s) 6, 66, 123, 204
BspANI GGCC 2 cut(s) 5, 132
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 3 cut(s) 150, 235, 246
BstACI GRCGYC 3 cut(s) 150, 235, 246
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 138, 185
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 132
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 62
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 37, 95
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 5, 132, 211, 229
CviKI_1 RGCY 4 cut(s) 5, 132, 211, 229
CviQI GTAC 1 cut(s) 241
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 37, 95
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 51, 58, 107, 220
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 6, 209
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 6, 209
HaeIII GGCC 2 cut(s) 5, 132
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 3 cut(s) 150, 235, 246
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 73, 192
HpaII CCGG 1 cut(s) 189
HphI GGTGA 4 cut(s) 103, 112, 145, 205
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 4 cut(s) 152, 240, 248, 251
HpyCH4IV ACGT 2 cut(s) 150, 246
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 185
HpySE526I ACGT 2 cut(s) 150, 246
Hsp92I GRCGYC 3 cut(s) 150, 235, 246
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 20, 78, 202, 217
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 2 cut(s) 150, 246
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 8 cut(s) 22, 50, 79, 108, 143, 191, 226, 267
MspI CCGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 138, 185
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 192
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 37, 95
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 1 cut(s) 201
SetI ASST 6 cut(s) 153, 213, 218, 231, 249, 278
SinI GGWCC 2 cut(s) 37, 95
Sse9I AATT 1 cut(s) 173
SsiI CCGC 4 cut(s) 6, 66, 123, 204
TaiI ACGT 2 cut(s) 153, 249
TaqI TCGA 3 cut(s) 71, 147, 195
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 73
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 147
ZraI GACGTC 2 cut(s) 151, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.