Rh4DG090200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003285
Physical Location & Seq
Forward (+)
13655099 .. 13655407
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG090200.1

Sequence Viewer

Length: 309 bp
ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACATCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAACCCATCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACGATTACAAAGGGAGGCGACTTGGTGAATGTGTATGTGGGGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.18

Weight (kDa)

6.39

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 6, 66, 123
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 2 cut(s) 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 2 cut(s) 211, 229
AluI AGCT 2 cut(s) 211, 229
AoxI GGCC 2 cut(s) 3, 130
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 2 cut(s) 37, 95
AsuHPI GGTGA 5 cut(s) 103, 112, 145, 205, 296
AvaII GGWCC 2 cut(s) 37, 95
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 70, 122, 164, 209
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme18I GGWCC 2 cut(s) 37, 95
BmgT120I GGNCC 2 cut(s) 37, 95
BmiI GGNNCC 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 235, 246
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 62
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 5, 132
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 189, 238
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 5, 132
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 3 cut(s) 6, 66, 123
BspANI GGCC 2 cut(s) 5, 132
BspCNI CTCAG 1 cut(s) 230
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 2 cut(s) 235, 246
BstACI GRCGYC 2 cut(s) 235, 246
BstDEI CTNAG 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 138, 185
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 132
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 62
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 37, 95
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 5, 132, 211, 229
CviKI_1 RGCY 4 cut(s) 5, 132, 211, 229
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 217
DinI GGCGCC 1 cut(s) 236
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 37, 95
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 51, 58, 107, 295
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 6, 209
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 2 cut(s) 6, 209
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 5, 132
HapII CCGG 2 cut(s) 189, 238
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 2 cut(s) 235, 246
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 73, 192
HpaII CCGG 2 cut(s) 189, 238
HphI GGTGA 5 cut(s) 103, 112, 145, 205, 296
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 220, 251
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 3 cut(s) 149, 248, 251
HpyCH4IV ACGT 2 cut(s) 144, 246
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 185
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 2 cut(s) 144, 246
Hsp92I GRCGYC 2 cut(s) 235, 246
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 5 cut(s) 20, 78, 202, 217, 251
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 2 cut(s) 144, 246
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 9 cut(s) 22, 50, 79, 108, 143, 191, 226, 267, 295
MspI CCGG 2 cut(s) 189, 238
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 138, 185
NarI GGCGCC 1 cut(s) 235
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 236
PagI TCATGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 192
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 37, 95
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 37, 95
SchI GAGTC 1 cut(s) 201
SetI ASST 5 cut(s) 147, 213, 218, 231, 249
SfoI GGCGCC 1 cut(s) 236
SinI GGWCC 2 cut(s) 37, 95
Sse9I AATT 1 cut(s) 173
SsiI CCGC 3 cut(s) 6, 66, 123
SspDI GGCGCC 1 cut(s) 234
TaiI ACGT 2 cut(s) 147, 249
TaqI TCGA 3 cut(s) 71, 147, 195
TasI AATT 1 cut(s) 173
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 73
TseI GCWGC 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 37, 95
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 147
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.