Rh5DG513100

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003285
Physical Location & Seq
Reverse (-)
79952847 .. 79967303
14457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG513100.1

Sequence Viewer

Length: 669 bp
ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTTATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCAACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACTCCGGAGTCGAACCCACCGCGCAGCTCACCTCATACTTAAAGCTCTGGCGCCGGTACGACGTCGGATTTGCAGACAATTACAAAGGGAGGCGACTTGGTGAATGTGGCGACGACGAGCCAATTGACTGTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGACCCAATTGATTGTGGGCTTGGTAGTTTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGGGAATGAAGCTCAGGTGCAACCTGCTGATCCAGATAATCAAGGTGAGGATGATGTCGACGAACCTCCACCCGGTTTCTGGAGCAAAACTCAAAGACCCTTCTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

222

Amino Acids

23.96

Weight (kDa)

4.46

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 615
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 4 cut(s) 6, 66, 123, 204
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 173, 439
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 2 cut(s) 235, 246
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 34, 629, 636
AgsI TTSAA 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 211, 229, 569
AluI AGCT 3 cut(s) 211, 229, 569
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 581
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 3 cut(s) 3, 130, 361
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 173, 439
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 3 cut(s) 37, 95, 378
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 8 cut(s) 103, 112, 145, 205, 296, 349, 424, 614
AvaII GGWCC 3 cut(s) 37, 95, 378
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 70, 122, 164
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 589
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 6, 209
BlsI GCNGC 2 cut(s) 7, 210
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 3 cut(s) 37, 95, 378
BmgT120I GGNCC 3 cut(s) 37, 95, 378
BmiI GGNNCC 2 cut(s) 236, 379
BmrFI CCNGG 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 235, 246
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 629, 636
Bse118I RCCGGY 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 62, 613
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 34, 629, 636
BseMII CTCAG 2 cut(s) 336, 584
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 5, 132, 363
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 3 cut(s) 189, 238, 630
BslI CCNNNNNNNGG 3 cut(s) 34, 629, 636
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 3 cut(s) 5, 132, 363
Bso31I GGTCTC 1 cut(s) 539
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 108, 586
BspACI CCGC 4 cut(s) 6, 66, 123, 204
BspANI GGCC 3 cut(s) 5, 132, 363
BspCNI CTCAG 2 cut(s) 337, 583
BspEI TCCGGA 1 cut(s) 188
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 236, 379
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 108, 586
BssNI GRCGYC 2 cut(s) 235, 246
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 2 cut(s) 235, 246
BstDEI CTNAG 2 cut(s) 345, 570
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 62, 613
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 2 cut(s) 111, 589
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 2 cut(s) 108, 586
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 628
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 220
BsuRI GGCC 3 cut(s) 5, 132, 363
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 62, 613
BveI ACCTGC 1 cut(s) 589
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 3 cut(s) 37, 95, 378
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 106
CviJI RGCY 8 cut(s) 5, 132, 211, 229, 304, 363, 400, 569
CviKI_1 RGCY 8 cut(s) 5, 132, 211, 229, 304, 363, 400, 569
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 345, 570
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 110, 588
DpnII GATC 2 cut(s) 108, 586
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 3 cut(s) 37, 95, 378
Eco57I CTGAAG 1 cut(s) 447
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 51, 58, 107, 220
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 6, 209
FokI GGATG 2 cut(s) 49, 620
Fsp4HI GCNGC 2 cut(s) 6, 209
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 2 cut(s) 6, 209
GsuI CTGGAG 1 cut(s) 658
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 3 cut(s) 5, 132, 363
HapII CCGG 3 cut(s) 189, 238, 630
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 2 cut(s) 235, 246
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 2 cut(s) 148, 616
HindII GTYRAC 2 cut(s) 148, 616
HinfI GANTC 2 cut(s) 73, 192
HpaII CCGG 3 cut(s) 189, 238, 630
HphI GGTGA 8 cut(s) 103, 112, 145, 205, 296, 349, 424, 614
Hpy166II GTNNAC 3 cut(s) 148, 415, 616
Hpy188I TCNGA 5 cut(s) 251, 346, 382, 427, 436
Hpy188III TCNNGA 5 cut(s) 106, 189, 512, 590, 637
Hpy8I GTNNAC 3 cut(s) 148, 415, 616
Hpy99I CGWCG 5 cut(s) 248, 251, 299, 302, 620
HpyAV CCTTC 3 cut(s) 466, 551, 667
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 4 cut(s) 144, 150, 246, 417
HpyCH4V TGCA 2 cut(s) 257, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 2 cut(s) 345, 570
HpySE526I ACGT 4 cut(s) 144, 150, 246, 417
Hsp92I GRCGYC 2 cut(s) 235, 246
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 108, 586
LmnI GCTCC 1 cut(s) 639
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 4 cut(s) 144, 150, 246, 417
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 110, 588
MboI GATC 2 cut(s) 108, 586
MboII GAAGA 4 cut(s) 109, 470, 473, 509
MfeI CAATTG 2 cut(s) 306, 387
MluCI AATT 5 cut(s) 173, 262, 306, 387, 439
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 3 cut(s) 229, 405, 466
MroI TCCGGA 1 cut(s) 188
MseI TTAA 2 cut(s) 224, 372
MspI CCGG 3 cut(s) 189, 238, 630
MspR9I CCNGG 1 cut(s) 630
MunI CAATTG 2 cut(s) 306, 387
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 138
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 1 cut(s) 630
NdeII GATC 2 cut(s) 108, 586
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 2 cut(s) 236, 379
NmuCI GTSAC 1 cut(s) 151
PagI TCATGA 1 cut(s) 105
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 210
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 236, 379
PspPI GGNCC 3 cut(s) 37, 95, 378
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 614
SaqAI TTAA 2 cut(s) 224, 372
SatI GCNGC 2 cut(s) 6, 209
Sau3AI GATC 2 cut(s) 108, 586
Sau96I GGNCC 3 cut(s) 37, 95, 378
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 236
SinI GGWCC 3 cut(s) 37, 95, 378
Sse9I AATT 5 cut(s) 173, 262, 306, 387, 439
SsiI CCGC 4 cut(s) 6, 66, 123, 204
SspDI GGCGCC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 628
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 4 cut(s) 147, 153, 249, 420
TaqI TCGA 4 cut(s) 71, 195, 555, 615
TasI AATT 5 cut(s) 173, 262, 306, 387, 439
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 224, 372
Tru9I TTAA 2 cut(s) 224, 372
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 510, 540, 579
VpaK11BI GGWCC 3 cut(s) 37, 95, 378
XapI RAATTY 2 cut(s) 173, 439
XcmI CCANNNNNNNNNTGG 2 cut(s) 371, 633
XmiI GTMKAC 1 cut(s) 615
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.