Rh5CG038100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003285
Physical Location & Seq
Reverse (-)
2420521 .. 2420694
174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG038100.1

Sequence Viewer

Length: 174 bp
ATGATCACCATCTTCACCGCCCACGGCCTTTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCTGGTACGATGTCGGATTTGTAGACGATTACAAAGGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.48

Weight (kDa)

5.52

Isoelectric Point (pI)

5.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccI GTMKAC 2 cut(s) 42, 153
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 18, 99
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 2 cut(s) 106, 124
AluI AGCT 2 cut(s) 106, 124
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 2 cut(s) 103, 132
AsuHPI GGTGA 3 cut(s) 7, 40, 100
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 17, 59
BceAI ACGGC 2 cut(s) 40, 49
BclI TGATCA 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 84
BsnI GGCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 18, 99
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 2 cut(s) 103, 132
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 33, 80, 100
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 22
CfoI GCGC 2 cut(s) 103, 132
Csp6I GTAC 1 cut(s) 136
CviJI RGCY 4 cut(s) 27, 94, 106, 124
CviKI_1 RGCY 4 cut(s) 27, 94, 106, 124
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 112
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 96
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 42, 153
Fnu4HI GCNGC 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 104
GlaI GCGC 2 cut(s) 102, 131
GluI GCNGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 27
HapII CCGG 1 cut(s) 84
HhaI GCGC 2 cut(s) 103, 132
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 2 cut(s) 101, 130
HinP1I GCGC 2 cut(s) 101, 130
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 7, 40, 100
Hpy166II GTNNAC 2 cut(s) 43, 154
Hpy188I TCNGA 2 cut(s) 115, 146
Hpy8I GTNNAC 2 cut(s) 43, 154
Hpy99I CGWCG 2 cut(s) 44, 47
HpyCH4IV ACGT 2 cut(s) 39, 45
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 80, 100
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 39, 45
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 2 cut(s) 101, 130
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 97, 112, 118
Lsp1109I GCAGC 1 cut(s) 115
MaeII ACGT 2 cut(s) 39, 45
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 3 cut(s) 86, 121, 162
MspI CCGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 33, 80, 100
NdeII GATC 1 cut(s) 3
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 87
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 42, 48, 108, 113, 126, 173
SgeI CNNG 8 cut(s) 35, 74, 96, 103, 112, 133, 139, 145
SgrDI CGTCGACG 1 cut(s) 41
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 18, 99
TaiI ACGT 2 cut(s) 42, 48
TaqI TCGA 2 cut(s) 42, 90
TasI AATT 1 cut(s) 68
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 46
XapI RAATTY 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 42, 153
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.