Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

2419554 .. 2420774

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATCACCATCTTCACCGCCCACGGCCTTTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAGACTTCAAGCTCTGGCGCTGGTACGATGTCGGATTTGTAGACGATTACAAAGGGAGTGTGGTGAACGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTCAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGACATTGTTTGTTCTTGTTTTCTCAATTTGAATTGGATTAGAAGTTGTCAAATTGCTGCATTTGCATGTAATGTGAGATTCTTGATGTTGGGGGCGGTAACTGTGGTCGGGGATGAGCTCACGTTCGAGGCCGAAATAGGAATTCATTTTGGGGTGAGTGGTTGGTGGCTGGTGGCGGAGCTTGCTTCGGAGGTTGCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

174

Amino Acids

19.05

Weight (kDa)

4.28

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccI	GTMKAC	2 cut(s)	42, 153
AccII	CGCG	1 cut(s)	101
AciI	CCGC	5 cut(s)	18, 99, 416, 497, 518
AcsI	RAATTY	3 cut(s)	68, 202, 462
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	121, 221, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	4 cut(s)	106, 124, 439, 502
AluI	AGCT	4 cut(s)	106, 124, 439, 502
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	25, 450
ApeKI	GCWGC	2 cut(s)	103, 377
ApoI	RAATTY	3 cut(s)	68, 202, 462
AspLEI	GCGC	2 cut(s)	103, 132
AsuHPI	GGTGA	5 cut(s)	7, 40, 100, 187, 487
BanII	GRGCYC	2 cut(s)	96, 441
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	115, 364
BccI	CCATC	2 cut(s)	17, 59
BceAI	ACGGC	2 cut(s)	40, 49
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	104, 378, 519
BlsI	GCNGC	3 cut(s)	105, 379, 520
BpiI	GAAGAC	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	115, 364
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	27, 452
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	27, 452
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	96, 441
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	5 cut(s)	18, 99, 416, 497, 518
BspANI	GGCC	2 cut(s)	27, 452
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	2 cut(s)	112, 522
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	103, 132
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 80, 100, 383, 503
BstNSI	RCATGY	1 cut(s)	390
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	115, 364
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	27, 452
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	2 cut(s)	103, 132
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	9 cut(s)	27, 94, 106, 124, 439, 452, 490, 502, 521
CviKI_1	RGCY	9 cut(s)	27, 94, 106, 124, 439, 452, 490, 502, 521
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	112, 522
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	2 cut(s)	96, 441
Eco31I	GGTCTC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	462
EcoT38I	GRGCYC	2 cut(s)	96, 441
FaeI	CATG	1 cut(s)	390
FaiI	YATR	1 cut(s)	388
FatI	CATG	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	42, 153
Fnu4HI	GCNGC	3 cut(s)	104, 378, 519
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	96, 441
Fsp4HI	GCNGC	3 cut(s)	104, 378, 519
GlaI	GCGC	2 cut(s)	102, 131
GluI	GCNGC	3 cut(s)	104, 378, 519
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	27, 452
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	2 cut(s)	103, 132
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	390
Hin6I	GCGC	2 cut(s)	101, 130
HinP1I	GCGC	2 cut(s)	101, 130
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	87, 399
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	5 cut(s)	7, 40, 100, 187, 487
Hpy166II	GTNNAC	3 cut(s)	43, 154, 178
Hpy188I	TCNGA	5 cut(s)	115, 146, 190, 199, 511
Hpy188III	TCNNGA	2 cut(s)	275, 403
Hpy8I	GTNNAC	3 cut(s)	43, 154, 178
Hpy99I	CGWCG	2 cut(s)	44, 47
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	4 cut(s)	39, 45, 180, 443
HpyCH4V	TGCA	2 cut(s)	380, 386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 80, 100, 383, 503
HpyF3I	CTNAG	2 cut(s)	112, 522
HpySE526I	ACGT	4 cut(s)	39, 45, 180, 443
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	390
HspAI	GCGC	2 cut(s)	101, 130
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	4 cut(s)	97, 112, 118, 476
Lsp1109I	GCAGC	2 cut(s)	115, 364
MaeII	ACGT	4 cut(s)	39, 45, 180, 443
MaeIII	GTNAC	2 cut(s)	46, 418
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	4, 233, 236, 272, 332
MhlI	GDGCHC	2 cut(s)	96, 441
MluCI	AATT	6 cut(s)	68, 202, 346, 352, 372, 462
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	124, 229
MnlI	CCTC	7 cut(s)	86, 121, 201, 245, 292, 442, 505
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	5 cut(s)	33, 80, 100, 383, 503
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 87
PfeI	GAWTC	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	105, 379, 520
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	441
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	3 cut(s)	104, 378, 519
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	96, 441
SgrDI	CGTCGACG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	385
Sse9I	AATT	6 cut(s)	68, 202, 346, 352, 372, 462
SsiI	CCGC	5 cut(s)	18, 99, 416, 497, 518
SstI	GAGCTC	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	4 cut(s)	42, 48, 183, 446
TaqI	TCGA	4 cut(s)	42, 90, 318, 447
TasI	AATT	6 cut(s)	68, 202, 346, 352, 372, 462
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	103, 377
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	273, 303, 455
XapI	RAATTY	3 cut(s)	68, 202, 462
XceI	RCATGY	1 cut(s)	390
XmiI	GTMKAC	2 cut(s)	42, 153
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.