RLG00000020598

H ACA ribonucleoprotein complex non-core subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003285
Physical Location & Seq
Forward (+)
66606292 .. 66607099
808 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020598

Sequence Viewer

Length: 729 bp
ATGGCTGCTTCCTCCTACCCAAAAACCCCAGATCTGGTCCTCACACATCATATCTCATACCCATCCGCCTCGAATCCACCAACTACTTTATCTGGTCCTCATCTCATGATCACCATCGTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCTGACAAATTCACCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCATACTTCAAGCTCTGGCGCCGGATGAAGCTCTTGTCTGGTTTGATTGGGGAGGATTCTAATTTGGCGATAACCGAGAGGGCAACGACAAATTTGAGGGCGACGACGAGCCAATTGACTGAGCGTGGTTCTGTGGTGGAGGTGAAGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATAGGTCCGACCCAATTAATTGTGGGCTTGGTAGTGTGGTGAACATGAAGTCTGAAGTTTCAGAAAATTTGAAGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGGAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGGTGTGGAGGGTGTGAAGAGCAAAATGGAGAGTGGGATTGAGAGCGAAAGTTCAGATTTGGAGAGAGTGAGAGTGAGAGTTCATCAGCAGCATCATCTTCTTCGAGTAGAAGCTCTAGTGATGAGGAGGAGGATGAGAGAGAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gar1

Protein Analysis

243

Amino Acids

26.41

Weight (kDa)

5.72

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 66, 123, 204
AcsI RAATTY 3 cut(s) 173, 307, 460
AcuI CTGAAG 1 cut(s) 468
AcyI GRCGYC 2 cut(s) 150, 235
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 226, 466, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 4 cut(s) 211, 229, 247, 692
AluI AGCT 4 cut(s) 211, 229, 247, 692
Alw26I GTCTC 1 cut(s) 560
AoxI GGCC 2 cut(s) 130, 382
ApeKI GCWGC 3 cut(s) 5, 208, 667
ApoI RAATTY 3 cut(s) 173, 307, 460
AseI ATTAAT 1 cut(s) 411
AspLEI GCGC 2 cut(s) 208, 237
AspS9I GGNCC 3 cut(s) 37, 95, 399
AsuHPI GGTGA 7 cut(s) 103, 112, 145, 169, 205, 370, 445
AvaII GGWCC 3 cut(s) 37, 95, 399
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 220, 679
BccI CCATC 3 cut(s) 70, 122, 164
BceAI ACGGC 2 cut(s) 145, 154
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 238
BglI GCCNNNNNGGC 1 cut(s) 138
BglII AGATCT 1 cut(s) 31
BisI GCNGC 3 cut(s) 6, 209, 668
BlsI GCNGC 3 cut(s) 7, 210, 669
Bme18I GGWCC 3 cut(s) 37, 95, 399
BmgT120I GGNCC 3 cut(s) 37, 95, 399
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 150, 235
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 3 cut(s) 62, 246, 717
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 327, 357
BseRI GAGGAG 2 cut(s) 718, 721
BseXI GCAGC 2 cut(s) 220, 679
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 132, 384
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 189, 238
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 560
BsnI GGCC 2 cut(s) 132, 384
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 31, 108
BspACI CCGC 3 cut(s) 66, 123, 204
BspANI GGCC 2 cut(s) 132, 384
BspCNI CTCAG 2 cut(s) 328, 358
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 560
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 31, 108
BssNI GRCGYC 2 cut(s) 150, 235
Bst6I CTCTTC 3 cut(s) 461, 477, 590
BstACI GRCGYC 2 cut(s) 150, 235
BstDEI CTNAG 2 cut(s) 336, 366
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 62, 246, 717
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 208, 237
BstKTI GATC 2 cut(s) 34, 111
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 2 cut(s) 31, 108
BstMWI GCNNNNNNNGC 2 cut(s) 138, 205
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 220, 679
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuRI GGCC 2 cut(s) 132, 384
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 3 cut(s) 62, 246, 717
CciI TCATGA 1 cut(s) 105
CfoI GCGC 2 cut(s) 208, 237
Cfr13I GGNCC 3 cut(s) 37, 95, 399
CviAII CATG 2 cut(s) 106, 439
DdeI CTNAG 2 cut(s) 336, 366
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 33, 110
DpnII GATC 2 cut(s) 31, 108
Eam1104I CTCTTC 3 cut(s) 461, 477, 590
EarI CTCTTC 3 cut(s) 461, 477, 590
EciI GGCGGA 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 3 cut(s) 37, 95, 399
Eco57I CTGAAG 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaeI CATG 2 cut(s) 109, 442
FaiI YATR 5 cut(s) 51, 58, 107, 220, 440
FatI CATG 2 cut(s) 105, 438
FbaI TGATCA 1 cut(s) 108
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 6, 209, 668
FokI GGATG 3 cut(s) 49, 253, 724
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 6, 209, 668
FspBI CTAG 1 cut(s) 695
GlaI GCGC 2 cut(s) 207, 236
GluI GCNGC 3 cut(s) 6, 209, 668
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 132, 384
HapII CCGG 2 cut(s) 189, 238
HhaI GCGC 2 cut(s) 208, 237
Hin1I GRCGYC 2 cut(s) 150, 235
Hin1II CATG 2 cut(s) 109, 442
Hin6I GCGC 2 cut(s) 206, 235
HinP1I GCGC 2 cut(s) 206, 235
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 73, 192, 272
HpaII CCGG 2 cut(s) 189, 238
HphI GGTGA 7 cut(s) 103, 112, 145, 169, 205, 370, 445
Hpy166II GTNNAC 2 cut(s) 148, 436
Hpy188I TCNGA 5 cut(s) 367, 403, 448, 457, 634
Hpy188III TCNNGA 2 cut(s) 106, 533
Hpy8I GTNNAC 2 cut(s) 148, 436
Hpy99I CGWCG 4 cut(s) 149, 152, 322, 325
HpyAV CCTTC 2 cut(s) 487, 572
HpyCH4IV ACGT 2 cut(s) 144, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 205
HpyF3I CTNAG 2 cut(s) 336, 366
HpySE526I ACGT 2 cut(s) 144, 150
Hsp92I GRCGYC 2 cut(s) 150, 235
Hsp92II CATG 2 cut(s) 109, 442
HspAI GCGC 2 cut(s) 206, 235
KasI GGCGCC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 31, 108
LguI GCTCTTC 1 cut(s) 590
LpnPI CCDG 8 cut(s) 20, 42, 78, 180, 202, 217, 240, 251
Lsp1109I GCAGC 2 cut(s) 220, 679
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 695
MaeII ACGT 2 cut(s) 144, 150
MaeIII GTNAC 2 cut(s) 118, 151
MalI GATC 2 cut(s) 33, 110
MboI GATC 2 cut(s) 31, 108
MboII GAAGA 7 cut(s) 478, 491, 494, 530, 607, 668, 671
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 7 cut(s) 173, 277, 307, 329, 408, 412, 460
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 426, 487
MseI TTAA 2 cut(s) 393, 411
MspI CCGG 2 cut(s) 189, 238
MunI CAATTG 1 cut(s) 329
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 138, 205
NarI GGCGCC 1 cut(s) 235
NdeII GATC 2 cut(s) 31, 108
NlaIII CATG 2 cut(s) 109, 442
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 2 cut(s) 118, 151
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 192
PfeI GAWTC 2 cut(s) 73, 272
PkrI GCNGC 3 cut(s) 7, 210, 669
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 3 cut(s) 37, 95, 399
PsuI RGATCY 1 cut(s) 31
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 2 cut(s) 393, 411
SatI GCNGC 3 cut(s) 6, 209, 668
Sau3AI GATC 2 cut(s) 31, 108
Sau96I GGNCC 3 cut(s) 37, 95, 399
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 1 cut(s) 679
SfoI GGCGCC 1 cut(s) 236
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 3 cut(s) 37, 95, 399
Sse9I AATT 7 cut(s) 173, 277, 307, 329, 408, 412, 460
SsiI CCGC 3 cut(s) 66, 123, 204
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 1 cut(s) 695
TaiI ACGT 2 cut(s) 147, 153
TaqI TCGA 5 cut(s) 71, 147, 195, 576, 682
TasI AATT 7 cut(s) 173, 277, 307, 329, 408, 412, 460
TfiI GAWTC 2 cut(s) 73, 272
Tru1I TTAA 2 cut(s) 393, 411
Tru9I TTAA 2 cut(s) 393, 411
TseFI GTSAC 2 cut(s) 118, 151
TseI GCWGC 3 cut(s) 5, 208, 667
Tsp45I GTSAC 2 cut(s) 118, 151
TspDTI ATGAA 5 cut(s) 257, 455, 531, 561, 650
VpaK11BI GGWCC 3 cut(s) 37, 95, 399
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 3 cut(s) 173, 307, 460
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 695
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.