Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003285

Physical Location & Seq

Genomic Coordinates Reverse (-)

26294847 .. 26295820

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCGCTTCCTCCTACCCAAAAACCCCAAATCTGGTCCTCACACATCATATCTCATCCTCATCTCATGATCACCATCTTCACCGCCCACGGCCTCTACGGCAACGTCGACGTCACCATCAAAACCCCCGACAAATTCGCCCTCAACGCCGGAGTCGAGCCCACCGCGCAGCTCACCTCAAACTTCAAGCTCTAGCGCCGTCTGAGGTAGGTGGTGGAGGCCAAATCGTTAATGGGTCCGACCCAATTGATTGTGGGCTTGGTAGTGTGGTGAATGTGAAGTCTGAAGTTTCAGAAAATTTGAGGAGTTCTATTGAAGAAGAGTTGGGGAAGGTTAGTTTGGTTGCAGGGAATGAAGAAAGTTTGGTTCTTGATAGTGGGAATGAAGTGAGTGAGGATTTGGAGACCAAAATCGAAGCAGCATCTTCTTCGAGTAGTAGCTCTAGTGATGAGGAGGAGGAGGAGGAGGATGAGAGAGAGAGTGATGAGGAGGATGAGGAGAAGGATGGAGAAGGGAATGTGAAGGCGGAGGCGGAGAAGGAGGGCAATGATGAGGCTTGTGAACTTGAAGAAGGTGAGATAAGTGGTGCAGAGCAGATAGGTAATGGAAGTGGTGATGAGGAGATTGACCGTGAAAGTTTTCAGGTGGGATTCCAATTTTGGGAGTGGAGATGGGAGATTGAAATTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0000491 GO:0000493 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010638 GO:0016043 GO:0016070 GO:0016072 GO:0016074 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0031118 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032210 GO:0032212 GO:0032991 GO:0033043 GO:0033044 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070034 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0090669 GO:0097159 GO:1901360 GO:1901363 GO:1902369 GO:1904356 GO:1904358 GO:1905323 GO:1990904 GO:2000112 GO:2000278 GO:2000573 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gar1

Protein Analysis

232

Amino Acids

25.6

Weight (kDa)

4.59

Isoelectric Point (pI)

77.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003285)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000000737 RLG00000002146 RLG00000007148 RLG00000014727 RLG00000018740 RLG00000020598 RLG00000022788
rosa_multiflora	Rmu_sc0003941.1_g000015
rosa_roxburghii	Rroxscaffold_5G00380620
rosa_rugosa	Rorug06G0129500
rosa_samantha	Rh1AG059900 Rh1AG424100 Rh1AG426200 Rh1BG388600 Rh1CG401900 Rh1CG413900 Rh1DG419700 Rh2AG352900 Rh2BG187300 Rh2CG455300 Rh3CG340800 Rh4DG008700 Rh4DG090200 Rh4DG090300 Rh5AG035600 Rh5CG038100 Rh5DG506800 Rh5DG513100 Rh6BG083300 Rh6CG244800 Rh7BG044900 Rh7BG199000 Rh7BG216900 Rh7BG438700 Rh7CG173000 Rh7CG173100 Rh7CG412500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	6, 85, 166, 527, 533
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	135, 298, 684
AcuI	CTGAAG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	34, 661
AgsI	TTSAA	4 cut(s)	188, 317, 569, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	3 cut(s)	173, 191, 441
AluI	AGCT	3 cut(s)	173, 191, 441
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	3, 92, 220
ApeKI	GCWGC	2 cut(s)	170, 419
ApoI	RAATTY	3 cut(s)	135, 298, 684
Asp700I	GAANNNNTTC	1 cut(s)	639
AspLEI	GCGC	2 cut(s)	170, 199
AspS9I	GGNCC	2 cut(s)	37, 237
AsuHPI	GGTGA	7 cut(s)	65, 74, 107, 167, 283, 587, 626
AvaII	GGWCC	2 cut(s)	37, 237
BanII	GRGCYC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	182, 431
BccI	CCATC	4 cut(s)	84, 126, 500, 666
BceAI	ACGGC	3 cut(s)	107, 116, 184
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	194, 444
BfoI	RGCGCY	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	6, 171, 420
BlsI	GCNGC	3 cut(s)	7, 172, 421
Bme18I	GGWCC	2 cut(s)	37, 237
BmgT120I	GGNCC	2 cut(s)	37, 237
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 661
Bse3DI	GCAATG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	4 cut(s)	56, 475, 499, 511
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	34, 661
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	9 cut(s)	319, 467, 470, 473, 476, 479, 503, 512, 635
BseXI	GCAGC	2 cut(s)	182, 431
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	5, 94, 222
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	34, 661
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	3 cut(s)	5, 94, 222
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	5 cut(s)	6, 85, 166, 527, 533
BspANI	GGCC	3 cut(s)	5, 94, 222
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	238
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	4 cut(s)	56, 475, 499, 511
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	170, 199
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 147, 167
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	182, 431
BsuRI	GGCC	3 cut(s)	5, 94, 222
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	56, 475, 499, 511
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	2 cut(s)	170, 199
Cfr13I	GGNCC	2 cut(s)	37, 237
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	9 cut(s)	5, 94, 161, 173, 191, 222, 259, 441, 557
CviKI_1	RGCY	9 cut(s)	5, 94, 161, 173, 191, 222, 259, 441, 557
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	2 cut(s)	542, 548
Eco24I	GRGCYC	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	37, 237
Eco57I	CTGAAG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	51, 69
FatI	CATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	6, 171, 420
FokI	GGATG	4 cut(s)	43, 482, 506, 518
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	3 cut(s)	6, 171, 420
FspBI	CTAG	2 cut(s)	194, 444
GlaI	GCGC	2 cut(s)	169, 198
GluI	GCNGC	3 cut(s)	6, 171, 420
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	5, 94, 222
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	2 cut(s)	170, 199
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	2 cut(s)	168, 197
HinP1I	GCGC	2 cut(s)	168, 197
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	154, 651
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	7 cut(s)	65, 74, 107, 167, 283, 587, 626
Hpy166II	GTNNAC	2 cut(s)	110, 563
Hpy188I	TCNGA	4 cut(s)	205, 241, 286, 295
Hpy188III	TCNNGA	2 cut(s)	68, 371
Hpy8I	GTNNAC	2 cut(s)	110, 563
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	6 cut(s)	325, 496, 506, 517, 532, 566
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	2 cut(s)	106, 112
HpyCH4V	TGCA	2 cut(s)	347, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 147, 167
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	106, 112
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	2 cut(s)	168, 197
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	20, 164, 333, 629
Lsp1109I	GCAGC	2 cut(s)	182, 431
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	194, 444
MaeII	ACGT	2 cut(s)	106, 112
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	7 cut(s)	71, 329, 332, 368, 417, 420, 581
MfeI	CAATTG	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	5 cut(s)	135, 246, 298, 656, 684
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	100, 147, 167
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	113
PagI	TCATGA	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 154
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	651
PkrI	GCNGC	3 cut(s)	7, 172, 421
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	37, 237
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	6, 171, 420
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	2 cut(s)	37, 237
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	431
SgrDI	CGTCGACG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	37, 237
Sse9I	AATT	5 cut(s)	135, 246, 298, 656, 684
SsiI	CCGC	5 cut(s)	6, 85, 166, 527, 533
SspMI	CTAG	2 cut(s)	194, 444
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	2 cut(s)	109, 115
TaqI	TCGA	4 cut(s)	109, 157, 414, 431
TasI	AATT	5 cut(s)	135, 246, 298, 656, 684
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	651
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	170, 419
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	369, 399
VpaK11BI	GGWCC	2 cut(s)	37, 237
XapI	RAATTY	3 cut(s)	135, 298, 684
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	2 cut(s)	194, 444
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.