Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

8916636 .. 8917634

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGTGTGAAACTCGAATGTTTCACTTTTAAAGCACCCGACGTGATCCAATTCGGCCTCGGCGGAGCGATAATTATTGTTGAGCCTGTCCTCGGTGTCCTTGAGAAGCTTCTCGTAAGAGGCGTGGAGCTCCTCGAGCTGGAGAATGGCCTTGCAGTCTCGCTTCTCTTTCTCGATGGAGTCGCGGCACTTCTGCTCGAGCTGGAAGAGGTGGGCCCACCACTGGAAGTGATCGATGTCGGAGGGGAGGGGGAAGAGAACGAGGTCCTCGAGCTTCTTAGAGAGAGTGGGCTCGATGTGGGCAAACTTGACCTTAGCGGTGTCGTCGGCCTAGTGGTCGGGACGGTCGCCGAGGGCGTTGAGGAAGGAGAGGGTCTGGGCGACGTCAAAGACGGCGCAGGTCATGGCAGCGATGACTTTGGGGTGGTCGGAGAGGTGGGGCATCTAGTTAAGGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

15.75

Weight (kDa)

4.05

Isoelectric Point (pI)

16.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	389
AccII	CGCG	1 cut(s)	185
AciI	CCGC	3 cut(s)	63, 185, 318
AclWI	GGATC	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	92, 139, 223
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	5 cut(s)	109, 130, 139, 202, 274
AluI	AGCT	5 cut(s)	109, 130, 139, 202, 274
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	3 cut(s)	134, 197, 269
AoxI	GGCC	5 cut(s)	55, 148, 214, 328, 456
ApaI	GGGCCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	3 cut(s)	214, 215, 265
AvaI	CYCGRG	3 cut(s)	134, 197, 269
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	218
BanII	GRGCYC	3 cut(s)	132, 218, 294
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	2 cut(s)	332, 446
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	2 cut(s)	186, 409
BlsI	GCNGC	2 cut(s)	187, 410
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	3 cut(s)	134, 197, 269
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	214, 215, 265
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	58, 91, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 139, 223
Bse1I	ACTGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	58, 91, 351
BseLI	CCNNNNNNNGG	3 cut(s)	92, 139, 223
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	5 cut(s)	57, 150, 216, 330, 458
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	3 cut(s)	134, 197, 269
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	92, 139, 223
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	5 cut(s)	57, 150, 216, 330, 458
BsoBI	CYCGRG	3 cut(s)	134, 197, 269
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	132, 218, 294
Bsp143I	GATC	2 cut(s)	45, 231
BspACI	CCGC	3 cut(s)	63, 185, 318
BspANI	GGCC	5 cut(s)	57, 150, 216, 330, 458
BspDI	ATCGAT	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	3 cut(s)	58, 91, 351
BssMI	GATC	2 cut(s)	45, 231
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	201, 249
BstACI	GRCGYC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	278, 314
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	48, 234
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	45, 231
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	420
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	5 cut(s)	57, 150, 216, 330, 458
BsuTUI	ATCGAT	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	389
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	214, 215, 265
ClaI	ATCGAT	1 cut(s)	234
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	278, 314
DpnI	GATC	2 cut(s)	47, 233
DpnII	GATC	2 cut(s)	45, 231
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	201, 249
EarI	CTCTTC	2 cut(s)	201, 249
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	3 cut(s)	132, 218, 294
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	3 cut(s)	134, 197, 269
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT38I	GRGCYC	3 cut(s)	132, 218, 294
FaeI	CATG	1 cut(s)	407
FaiI	YATR	1 cut(s)	405
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	186, 409
FriOI	GRGCYC	3 cut(s)	132, 218, 294
Fsp4HI	GCNGC	2 cut(s)	186, 409
FspBI	CTAG	2 cut(s)	332, 446
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	2 cut(s)	186, 409
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	5 cut(s)	57, 150, 216, 330, 458
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	180
Hpy188I	TCNGA	2 cut(s)	242, 431
Hpy188III	TCNNGA	2 cut(s)	173, 340
Hpy99I	CGWCG	3 cut(s)	44, 329, 386
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	42, 384
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	278, 314
HpySE526I	ACGT	2 cut(s)	42, 384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	45, 231
LmnI	GCTCC	3 cut(s)	65, 127, 135
LpnPI	CCDG	6 cut(s)	99, 125, 188, 209, 362, 384
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	332, 446
MaeII	ACGT	2 cut(s)	42, 384
MalI	GATC	2 cut(s)	47, 233
MboI	GATC	2 cut(s)	45, 231
MboII	GAAGA	2 cut(s)	218, 266
MhlI	GDGCHC	3 cut(s)	132, 218, 294
MluCI	AATT	2 cut(s)	50, 72
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	220, 409
MseI	TTAA	2 cut(s)	30, 450
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	45, 231
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	2 cut(s)	39, 376
PaeR7I	CTCGAG	3 cut(s)	134, 197, 269
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 267, 354
PkrI	GCNGC	2 cut(s)	187, 410
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	216
PspOMI	GGGCCC	1 cut(s)	214
PspPI	GGNCC	3 cut(s)	214, 215, 265
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	3 cut(s)	134, 197, 269
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	30, 450
SatI	GCNGC	2 cut(s)	186, 409
Sau3AI	GATC	2 cut(s)	45, 231
Sau96I	GGNCC	3 cut(s)	214, 215, 265
SchI	GAGTC	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	132, 218, 294
SfaNI	GCATC	1 cut(s)	451
Sfr274I	CTCGAG	3 cut(s)	134, 197, 269
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	3 cut(s)	134, 197, 269
SmlI	CTYRAG	4 cut(s)	101, 134, 197, 269
SmoI	CTYRAG	4 cut(s)	101, 134, 197, 269
Sse9I	AATT	2 cut(s)	50, 72
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	3 cut(s)	63, 185, 318
SspMI	CTAG	2 cut(s)	332, 446
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	45, 387
TaqI	TCGA	7 cut(s)	15, 135, 174, 198, 234, 270, 294
TasI	AATT	2 cut(s)	50, 72
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	30, 450
Tru9I	TTAA	2 cut(s)	30, 450
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	1 cut(s)	408
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	265
XhoI	CTCGAG	3 cut(s)	134, 197, 269
XspI	CTAG	2 cut(s)	332, 446
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.