Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

7880120 .. 7885063

Gene Structure 4944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTCTTTTTGCACTTTCAAAGATTAAGAGTGATCTGGAGTAGGTGCTACTGGTCATATCGGGAGACGAGGCATTGCTTCTGTACACTCAGATTGAGATTTGCAGTTGTTTGCTTCATTGTTTTTGTGCATGGCAGAGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTTCTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGCTTGGTGTTAAGTGGCAGGACATGAAATACAAGTCATGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATCAGAGAGCATGCTTCAATCCATCGATCTTCAAAGTCAAGTGATAATACAGATCATTTTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTTATGTTGGTTTTTTACCACATGAATTGTGCTTGTCCTTGTTTTCTTCAGTTTCTTGGAGGATGACCATGCAGGTGGTTTCCATGTATCTCTTTATTATATGTTCTTTCGATAAACCTAAAAGAGAAAATTCTCTATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

175

Amino Acids

20.47

Weight (kDa)

8.39

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	511
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	20, 306, 321
Alw26I	GTCTC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	511
Asp700I	GAANNNNTTC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	140
BccI	CCATC	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	259, 450
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	83
Bsp143I	GATC	5 cut(s)	33, 157, 288, 314, 340
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	5 cut(s)	33, 157, 288, 314, 340
BstAUI	TGTACA	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	259, 450
BstKTI	GATC	5 cut(s)	36, 160, 291, 317, 343
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	5 cut(s)	33, 157, 288, 314, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	313
BsuTUI	ATCGAT	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	259, 450
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	390, 425
CviAII	CATG	8 cut(s)	131, 206, 235, 249, 299, 404, 451, 466
CviJI	RGCY	1 cut(s)	362
CviKI_1	RGCY	1 cut(s)	362
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	5 cut(s)	35, 159, 290, 316, 342
DpnII	GATC	5 cut(s)	33, 157, 288, 314, 340
Eco32I	GATATC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	414
EcoRV	GATATC	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	8 cut(s)	134, 209, 238, 252, 302, 407, 454, 469
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	8 cut(s)	130, 205, 234, 248, 298, 403, 450, 465
FokI	GGATG	2 cut(s)	266, 457
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	58
HapII	CCGG	1 cut(s)	164
Hin1II	CATG	8 cut(s)	134, 209, 238, 252, 302, 407, 454, 469
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	92, 293
Hpy188III	TCNNGA	3 cut(s)	37, 62, 266
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4V	TGCA	6 cut(s)	13, 104, 130, 186, 356, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	8 cut(s)	134, 209, 238, 252, 302, 407, 454, 469
Kzo9I	GATC	5 cut(s)	33, 157, 288, 314, 340
LpnPI	CCDG	7 cut(s)	22, 37, 164, 177, 215, 342, 440
MalI	GATC	5 cut(s)	35, 159, 290, 316, 342
MboI	GATC	5 cut(s)	33, 157, 288, 314, 340
MboII	GAAGA	3 cut(s)	152, 309, 420
MluCI	AATT	3 cut(s)	377, 407, 511
MnlI	CCTC	3 cut(s)	63, 131, 435
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	26, 222
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	5 cut(s)	33, 157, 288, 314, 340
NlaIII	CATG	8 cut(s)	134, 209, 238, 252, 302, 407, 454, 469
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PaqCI	CACCTGC	1 cut(s)	445
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	26, 222
Sau3AI	GATC	5 cut(s)	33, 157, 288, 314, 340
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	4 cut(s)	47, 142, 459, 502
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	3 cut(s)	377, 407, 511
StyD4I	CCNGG	1 cut(s)	163
TaqI	TCGA	2 cut(s)	313, 492
TasI	AATT	3 cut(s)	377, 407, 511
TatI	WGTACW	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	26, 222
Tru9I	TTAA	2 cut(s)	26, 222
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	106, 251, 270, 362, 420
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.