Rh4DG189000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001546
Physical Location & Seq
Forward (+)
37322176 .. 37322397
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG189000.1

Sequence Viewer

Length: 222 bp
ATGCGAGTCGCCGTTAACAATATAGGCAAGGACGAGGTCCTCGAGCTTCTTGGAGAGAGTGGATTCGATGTGGGCGAGCTTGGCCTTGGAAGTGTCGACGGTCTCGTGGTCGGGGCAATTGTTGAGGGCGTTGAGGACGGAGTGGGTCTGGGCCACGTCGGAGTCGGCGTGGGTCATGGCAGCGATGGCTTTGGGGTCGGAGAGGTGGGGGCATCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.0

Weight (kDa)

4.05

Isoelectric Point (pI)

3.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 96
AjiI CACGTC 1 cut(s) 157
AluBI AGCT 2 cut(s) 46, 79
AluI AGCT 2 cut(s) 46, 79
Alw26I GTCTC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 82, 151
ApeKI GCWGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 37, 151
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 104
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 37, 151
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
BseDI CCNNGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 2 cut(s) 84, 153
BsiHKCI CYCGRG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 84, 153
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 41
BspANI GGCC 2 cut(s) 84, 153
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 85
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 81, 186
BstV1I GCAGC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 84, 153
BtgZI GCGATG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 2 cut(s) 37, 151
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 46, 79, 84, 153, 189
CviKI_1 RGCY 5 cut(s) 46, 79, 84, 153, 189
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 179
FaiI YATR 2 cut(s) 23, 177
FatI CATG 1 cut(s) 175
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 2 cut(s) 84, 153
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 2 cut(s) 16, 97
HindII GTYRAC 2 cut(s) 16, 97
HinfI GANTC 3 cut(s) 6, 63, 162
HpaI GTTAAC 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 16, 97
Hpy188I TCNGA 2 cut(s) 161, 200
Hpy8I GTNNAC 2 cut(s) 16, 97
Hpy99I CGWCG 2 cut(s) 101, 161
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 186
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 179
KspAI GTTAAC 1 cut(s) 16
LpnPI CCDG 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 156
MfeI CAATTG 1 cut(s) 117
MluCI AATT 1 cut(s) 117
MlyI GAGTC 2 cut(s) 15, 171
MmeI TCCRAC 2 cut(s) 139, 178
MnlI CCTC 5 cut(s) 28, 50, 118, 127, 196
MseI TTAA 1 cut(s) 15
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 81, 186
NlaIII CATG 1 cut(s) 179
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 72, 102, 165
PfeI GAWTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 2 cut(s) 14, 170
PpsI GAGTC 2 cut(s) 14, 170
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
PspPI GGNCC 2 cut(s) 37, 151
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 35
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 181
Sau96I GGNCC 2 cut(s) 37, 151
SchI GAGTC 2 cut(s) 15, 171
SetI ASST 5 cut(s) 39, 48, 81, 159, 207
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 42, 66, 96
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.