Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

24211983 .. 24213521

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGACCATATCGATGGCCAAGGATCTGAGCTGGACTGTGAAGGAGAAACTCTCAGTTGTTTGTGTTCCTGCAGCTAAGGGAAGAAGTCCAGATCTGATCATGTTCTTTCTGCACTTTCAAAGATTAAGAGTGATCTGGAGTAGGTGCTACTGGTCATATTGGGAGACAAGGCATTGCTTCTGTACGCTCAGATTGAGATTTGCAGCTATGTGCTTCATTGGTTTTGTACATGACATGCTAAACCATTCCATCCAGCCAAATCCTGATGAGTTTCTTGCAGTCTTCTATTCCCAATACAGTGCATTCATTGGTGAAATTGGACCATGTGGAGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.23

Weight (kDa)

8.84

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	2 cut(s)	187, 231
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	3 cut(s)	33, 77, 209
AluI	AGCT	3 cut(s)	33, 77, 209
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	74, 206
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	11, 277
BbvI	GCAGC	2 cut(s)	86, 218
BccI	CCATC	2 cut(s)	10, 260
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	72
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	75, 207
BlsI	GCNGC	2 cut(s)	76, 208
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BpiI	GAAGAC	2 cut(s)	11, 277
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	20, 69, 205
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	86, 218
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	25, 94, 99, 135
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	21, 68, 204
BspDI	ATCGAT	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	25, 94, 99, 135
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	40, 302
BstAUI	TGTACA	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	29, 55, 78, 191
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	4 cut(s)	28, 97, 102, 138
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	25, 94, 99, 135
BstNSI	RCATGY	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	86, 218
BstV2I	GAAGAC	2 cut(s)	11, 277
BstX2I	RGATCY	2 cut(s)	25, 94
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	25, 94
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	186, 230
CviAII	CATG	4 cut(s)	103, 233, 238, 327
CviJI	RGCY	5 cut(s)	20, 33, 77, 209, 259
CviKI_1	RGCY	5 cut(s)	20, 33, 77, 209, 259
CviQI	GTAC	2 cut(s)	186, 230
DdeI	CTNAG	4 cut(s)	29, 55, 78, 191
DpnI	GATC	4 cut(s)	27, 96, 101, 137
DpnII	GATC	4 cut(s)	25, 94, 99, 135
EaeI	YGGCCR	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	4 cut(s)	106, 236, 241, 330
FaiI	YATR	7 cut(s)	11, 104, 160, 212, 234, 239, 328
FatI	CATG	4 cut(s)	102, 232, 237, 326
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	75, 207
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	75, 207
GluI	GCNGC	2 cut(s)	75, 207
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	106, 236, 241, 330
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	30, 99, 194
Hpy188III	TCNNGA	3 cut(s)	92, 139, 266
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	40, 302
HpyCH4V	TGCA	5 cut(s)	74, 115, 206, 281, 305
HpyF3I	CTNAG	4 cut(s)	29, 55, 78, 191
Hsp92II	CATG	4 cut(s)	106, 236, 241, 330
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	25, 94, 99, 135
LpnPI	CCDG	7 cut(s)	19, 84, 105, 124, 139, 269, 279
Lsp1109I	GCAGC	2 cut(s)	86, 218
MalI	GATC	4 cut(s)	27, 96, 101, 137
MboI	GATC	4 cut(s)	25, 94, 99, 135
MboII	GAAGA	3 cut(s)	16, 96, 277
MflI	RGATCY	2 cut(s)	25, 94
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	20
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
MseI	TTAA	2 cut(s)	128, 340
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	305
NdeII	GATC	4 cut(s)	25, 94, 99, 135
NlaIII	CATG	4 cut(s)	106, 236, 241, 330
NspI	RCATGY	1 cut(s)	241
PctI	GAATGC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	76, 208
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	25, 94
RsaI	GTAC	2 cut(s)	187, 231
RsaNI	GTAC	2 cut(s)	186, 230
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	128, 340
SatI	GCNGC	2 cut(s)	75, 207
Sau3AI	GATC	4 cut(s)	25, 94, 99, 135
Sau96I	GGNCC	1 cut(s)	323
SetI	ASST	4 cut(s)	35, 79, 149, 211
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	40, 302
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	128, 340
Tru9I	TTAA	2 cut(s)	128, 340
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	74, 206
TspDTI	ATGAA	4 cut(s)	17, 208, 298, 326
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	323
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.