Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

33130157 .. 33132539

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG309000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAGATCGCCAAGATCATGAAGACCAGAACGATGGCCAAGGATCTGAGCGGGACTGTAAGGGAGAAACTCTCGGTTGTGTGCGCGATCAACGACGAGGACTCCAACGATTTTCAACAAGAGATTACCGACGACGATGTTGAGGGAATGGATGAGCTTGTTCGTGGCGGTAACTTGAGAAAAACTTCACGTTTGTGCTCCTGCAGCAAAGTAAGTATCTTTCTCTCTAGCTCAATTTCTTCTGTAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

84

Amino Acids

9.28

Weight (kDa)

4.66

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	51, 168
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	116
AleI	CACNNNNGTG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	157, 231
AluI	AGCT	2 cut(s)	157, 231
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	2 cut(s)	202, 243
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	6, 15, 43, 87
BspACI	CCGC	2 cut(s)	51, 168
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	1 cut(s)	51
BsrBI	CCGCTC	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	6, 15, 43, 87
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	4 cut(s)	9, 18, 46, 90
BstMBI	GATC	4 cut(s)	6, 15, 43, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstSFI	CTRYAG	2 cut(s)	202, 243
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	86
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	3 cut(s)	38, 157, 231
CviKI_1	RGCY	3 cut(s)	38, 157, 231
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	8, 17, 45, 89
DpnII	GATC	4 cut(s)	6, 15, 43, 87
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	3 cut(s)	98, 134, 137
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	6, 15, 43, 87
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	2 cut(s)	40, 214
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	4 cut(s)	8, 17, 45, 89
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	4 cut(s)	6, 15, 43, 87
MboII	GAAGA	2 cut(s)	34, 231
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	91, 136
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	38
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeII	GATC	4 cut(s)	6, 15, 43, 87
NlaIII	CATG	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	193
PagI	TCATGA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	193
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	4 cut(s)	6, 15, 43, 87
SchI	GAGTC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	3 cut(s)	159, 193, 233
SfcI	CTRYAG	2 cut(s)	202, 243
SmiMI	CAYNNNNRTG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	51, 168
SspMI	CTAG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	193
TasI	AATT	1 cut(s)	234
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.