Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

17451846 .. 17452242

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTACGGTGACGGTGGGAATCACGGTGGCTGTGTCGGTTTTGGATTTCTTGTTCTTCTTCTCGTTGGTTTTGTTATGTGAGTCGTCGTTAACAATATGGGTGAGGACGAGGTCCTCGAGCTTCTTGGAGAGAGTGGACTCGATGTGGGCGAGCTTGGCCTTAGCAGTGTCGACGGCGTCGACGGCCTCATGGTCAAGACGGTTGCTGAGGGCGTTGAGGACGAAGAGGGTCTGGGCGACGTCGGAGACGGCTCAGGTCATGGCAGCGATGACTTTGGGGTCGGAGAGGTGGGGAATCTGGTTGAGGAGGCCTGAGGAGGATGAGGATGGTTGTTGGGGTCATCGATCATATGAATCGGCGATAAGAGAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

8.88

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	280
AatII	GACGTC	1 cut(s)	245
AccI	GTMKAC	2 cut(s)	173, 182
AcyI	GRCGYC	2 cut(s)	179, 242
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	123, 156
AluI	AGCT	2 cut(s)	123, 156
Alw26I	GTCTC	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	159, 186, 311
ApeKI	GCWGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	22, 115
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	3 cut(s)	192, 201, 267
BcoDI	GTCTC	1 cut(s)	242
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	114
Bpu10I	CCTNAGC	3 cut(s)	163, 209, 255
Bsa29I	ATCGAT	1 cut(s)	346
BsaHI	GRCGYC	2 cut(s)	179, 242
Bse21I	CCTNAGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	346
BseGI	GGATG	2 cut(s)	328, 334
BseMII	CTCAG	3 cut(s)	200, 269, 306
BseRI	GAGGAG	2 cut(s)	322, 332
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	3 cut(s)	161, 188, 313
BshVI	ATCGAT	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	242
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	161, 188, 313
BsoBI	CYCGRG	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	347
BspANI	GGCC	3 cut(s)	161, 188, 313
BspCNI	CTCAG	3 cut(s)	201, 268, 307
BspDI	ATCGAT	1 cut(s)	346
BssMI	GATC	1 cut(s)	347
BssNI	GRCGYC	2 cut(s)	179, 242
Bst4CI	ACNGT	4 cut(s)	10, 16, 28, 204
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	2 cut(s)	179, 242
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	4 cut(s)	163, 209, 255, 315
BstF5I	GGATG	2 cut(s)	328, 334
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 185
BstV1I	GCAGC	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	161, 188, 313
BsuTUI	ATCGAT	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	328, 334
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	346
CseI	GACGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	192, 262
CviJI	RGCY	8 cut(s)	5, 32, 123, 156, 161, 188, 254, 313
CviKI_1	RGCY	8 cut(s)	5, 32, 123, 156, 161, 188, 254, 313
DdeI	CTNAG	4 cut(s)	163, 209, 255, 315
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
DrdI	GACNNNNNNGTC	1 cut(s)	280
DseDI	GACNNNNNNGTC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	195, 265
FaiI	YATR	6 cut(s)	79, 100, 193, 263, 352, 354
FatI	CATG	2 cut(s)	191, 261
FauNDI	CATATG	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	173, 182
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	2 cut(s)	335, 341
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	161, 188, 313
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	2 cut(s)	179, 242
Hin1II	CATG	2 cut(s)	195, 265
HincII	GTYRAC	3 cut(s)	93, 174, 183
HindII	GTYRAC	3 cut(s)	93, 174, 183
HinfI	GANTC	5 cut(s)	21, 83, 140, 297, 356
HpaI	GTTAAC	1 cut(s)	93
HphI	GGTGA	2 cut(s)	22, 115
Hpy166II	GTNNAC	4 cut(s)	93, 139, 174, 183
Hpy188I	TCNGA	2 cut(s)	247, 286
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	4 cut(s)	93, 139, 174, 183
Hpy99I	CGWCG	6 cut(s)	91, 178, 184, 187, 244, 247
HpyCH4III	ACNGT	4 cut(s)	10, 16, 28, 204
HpyCH4IV	ACGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 185
HpyF3I	CTNAG	4 cut(s)	163, 209, 255, 315
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	2 cut(s)	179, 242
Hsp92II	CATG	2 cut(s)	195, 265
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	220, 242, 286, 327
Lsp1109I	GCAGC	1 cut(s)	278
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	3 cut(s)	49, 52, 238
MlyI	GAGTC	2 cut(s)	92, 134
MmeI	TCCRAC	2 cut(s)	225, 264
MseI	TTAA	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	158, 185
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	195, 265
NmuCI	GTSAC	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	3 cut(s)	116, 149, 179
PfeI	GAWTC	3 cut(s)	21, 297, 356
PflFI	GACNNNGTC	2 cut(s)	112, 178
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	91, 134
PpsI	GAGTC	2 cut(s)	91, 134
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	118
PsyI	GACNNNGTC	2 cut(s)	112, 178
SalI	GTCGAC	2 cut(s)	172, 181
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	92, 134
SetI	ASST	7 cut(s)	116, 125, 158, 245, 261, 293, 377
Sfr274I	CTCGAG	1 cut(s)	118
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	313
TaaI	ACNGT	4 cut(s)	10, 16, 28, 204
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	5 cut(s)	119, 143, 173, 182, 346
TfiI	GAWTC	3 cut(s)	21, 297, 356
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	2 cut(s)	112, 178
VpaK11BI	GGWCC	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	118
XmiI	GTMKAC	2 cut(s)	173, 182
ZraI	GACGTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.