Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

46478258 .. 46478581

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGTCCTCGACATCGGCTCCGACATCGTTTGGCTCCAGTGCACCCCTTGCAAACGCTGCTACTTGGACTCTAAGAGGCTGGATGATGGAGTCGGGGCAGGACCCGAAGTTGCAGTTGTTGATCCGAGCGAAGTTGGGGTCGTGGTGGGAGAATTCGGTGGCGATTTCGGAGGGGGTGATGAGGGAGAGTTTGGATCGCCGTTGAGGGTGTGGTTGCGGGAGGAGGTTGTGGTCGGGACGGTCGCCGAGGGCGTTAAGGACGGAGTGGGTCTGGCCGATGTCGGAGACGGCGCTGGTCATGGCGGCGATGACTTTGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009505 GO:0009628 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044238 GO:0044464 GO:0050896 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

107

Amino Acids

10.89

Weight (kDa)

4.05

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AciI	CCGC	2 cut(s)	217, 303
AclWI	GGATC	2 cut(s)	116, 202
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	279
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	2 cut(s)	116, 202
AoxI	GGCC	1 cut(s)	273
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	4, 101
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	4, 101
BaeGI	GKGCMC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	2 cut(s)	184, 304
BcoDI	GTCTC	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	2 cut(s)	58, 304
BlsI	GCNGC	2 cut(s)	59, 305
Bme18I	GGWCC	2 cut(s)	4, 101
BmgT120I	GGNCC	2 cut(s)	4, 101
BmiI	GGNNCC	3 cut(s)	19, 35, 103
BpmI	CTGGAG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	121, 194
BspACI	CCGC	2 cut(s)	217, 303
BspANI	GGCC	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	19, 35, 103
BspPI	GGATC	2 cut(s)	116, 202
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	121, 194
Bst4CI	ACNGT	1 cut(s)	241
BstAPI	GCANNNNNTGC	2 cut(s)	48, 57
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	124, 197
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	121, 194
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 57
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	4, 101
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	4 cut(s)	18, 34, 79, 275
CviKI_1	RGCY	4 cut(s)	18, 34, 79, 275
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	123, 196
DpnII	GATC	2 cut(s)	121, 194
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	4, 101
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	302
FaiI	YATR	1 cut(s)	300
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	298
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	58, 304
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	58, 304
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	58, 304
GsuI	CTGGAG	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	68, 90
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	5 cut(s)	22, 126, 170, 284, 323
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	42, 51, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 57
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	121, 194
LmnI	GCTCC	2 cut(s)	23, 39
LpnPI	CCDG	5 cut(s)	50, 65, 84, 257, 279
Lsp1109I	GCAGC	1 cut(s)	44
MalI	GATC	2 cut(s)	123, 196
MboI	GATC	2 cut(s)	121, 194
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	62, 99
MmeI	TCCRAC	2 cut(s)	45, 262
MnlI	CCTC	8 cut(s)	17, 69, 164, 175, 198, 214, 217, 241
MseI	TTAA	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	48, 57
NdeII	GATC	2 cut(s)	121, 194
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	3 cut(s)	19, 35, 103
NmeAIII	GCCGAG	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	59, 305
PleI	GAGTC	2 cut(s)	62, 98
PpsI	GAGTC	2 cut(s)	62, 98
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	19, 35, 103
PspPI	GGNCC	2 cut(s)	4, 101
PspPPI	RGGWCCY	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	58, 304
Sau3AI	GATC	2 cut(s)	121, 194
Sau96I	GGNCC	2 cut(s)	4, 101
SchI	GAGTC	2 cut(s)	62, 99
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	1 cut(s)	228
SinI	GGWCC	2 cut(s)	4, 101
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	217, 303
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	4, 101
XapI	RAATTY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.