Rh3CG283400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001546
Physical Location & Seq
Reverse (-)
28510101 .. 28510589
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG283400.1

Sequence Viewer

Length: 231 bp
ATGGTCGGGACGGTCGCCGAGGGCGTTGAGGACGGAGTGGGTCTGGGCGAAGTCGGATACGGCGCGGGTCATGGCAGCAATGACTTTGGGGTCGGAGAGGTGGGGCATCTGGCTGAGGAGGATGAGGATGGTTGCTGGGGAATGATCAACTGGGGTTGGCCACATTTGTGTTATGACCTTCCAAGTGAGCTAGAAGTGGGGATCGATCTTGGGAAGTTGGTTGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

7.95

Weight (kDa)

4.05

Isoelectric Point (pI)

14.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccII CGCG 1 cut(s) 65
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 158
AleI CACNNNNGTG 1 cut(s) 166
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AlwI GGATC 1 cut(s) 209
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 65
BalI TGGCCA 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 76
BciVI GTATCC 1 cut(s) 50
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 50
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 155
Bse3DI GCAATG 1 cut(s) 85
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 127, 133
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 87
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 144, 201, 205
BspACI CCGC 1 cut(s) 65
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 65
BspPI GGATC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 85
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 3 cut(s) 144, 201, 205
Bst4CI ACNGT 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 127, 133
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 147, 204, 208
BstMBI GATC 3 cut(s) 144, 201, 205
BstMCI CGRYCG 1 cut(s) 15
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 204
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 204
BtsCI GGATG 2 cut(s) 127, 133
CfoI GCGC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 204
CviAII CATG 1 cut(s) 71
CviJI RGCY 3 cut(s) 113, 160, 190
CviKI_1 RGCY 3 cut(s) 113, 160, 190
DdeI CTNAG 1 cut(s) 114
DpnI GATC 3 cut(s) 146, 203, 207
DpnII GATC 3 cut(s) 144, 201, 205
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 158
FaeI CATG 1 cut(s) 74
FaiI YATR 2 cut(s) 72, 174
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 70
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 2 cut(s) 134, 140
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 76
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
Hpy188I TCNGA 2 cut(s) 56, 95
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 3 cut(s) 144, 201, 205
LpnPI CCDG 4 cut(s) 29, 95, 121, 136
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 191
MalI GATC 3 cut(s) 146, 203, 207
MboI GATC 3 cut(s) 144, 201, 205
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 226
MluNI TGGCCA 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 34, 73
MnlI CCTC 6 cut(s) 13, 22, 91, 109, 112, 118
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 166
Msp20I TGGCCA 1 cut(s) 160
MvnI CGCG 1 cut(s) 65
NdeII GATC 3 cut(s) 144, 201, 205
NlaIII CATG 1 cut(s) 74
NmeAIII GCCGAG 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PkrI GCNGC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 166
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 3 cut(s) 144, 201, 205
SetI ASST 3 cut(s) 102, 180, 192
SfaNI GCATC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 166
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 65
SspMI CTAG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 204
TasI AATT 1 cut(s) 226
TseI GCWGC 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 48
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.