Rh6AG024800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001546
Physical Location & Seq
Forward (+)
2869666 .. 2870424
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG024800.1

Sequence Viewer

Length: 231 bp
ATGCGAGTTGTCGTTAACAATATAGGCGAGGACGAGGTCCTCGAGCTTCTTGGAGAGAGTGGACTCGATGTGGGTGAGCTTGGCCTTGGCGGGTTGACGGTCTCGTGGTCGGGACGGTCGTCAAGGGAGTTGAGGACGGAGCGGGTCTGGGCGACGTCGGAGACGGCGCGGGTCATGGCGGAGATGGCTTTGGGGTCGGAGAGGTGGGGGCATCTAGTTGAGGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.29

Weight (kDa)

4.53

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 142
AccII CGCG 1 cut(s) 169
AciI CCGC 4 cut(s) 90, 142, 169, 179
AcyI GRCGYC 1 cut(s) 155
AluBI AGCT 2 cut(s) 46, 79
AluI AGCT 2 cut(s) 46, 79
Alw26I GTCTC 2 cut(s) 106, 155
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 103
BccI CCATC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 106, 155
BfaI CTAG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 106, 155
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 41
BspACI CCGC 4 cut(s) 90, 142, 169, 179
BspANI GGCC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 155
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 100, 117
BstACI GRCGYC 1 cut(s) 155
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 106, 155
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 118
BstUI CGCG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 84
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 2 cut(s) 175, 228
CviJI RGCY 4 cut(s) 46, 79, 84, 188
CviKI_1 RGCY 4 cut(s) 46, 79, 84, 188
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 178, 231
FaiI YATR 3 cut(s) 23, 176, 229
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 174, 227
FauI CCCGC 3 cut(s) 83, 135, 162
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 84
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 178, 231
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 2 cut(s) 16, 96
HindII GTYRAC 2 cut(s) 16, 96
HinfI GANTC 1 cut(s) 63
HpaI GTTAAC 1 cut(s) 16
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 16, 62, 96
Hpy188I TCNGA 2 cut(s) 160, 199
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 3 cut(s) 16, 62, 96
Hpy99I CGWCG 2 cut(s) 157, 160
HpyCH4III ACNGT 2 cut(s) 100, 117
HpyCH4IV ACGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 178, 231
HspAI GCGC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 133
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 142
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 2 cut(s) 138, 177
MnlI CCTC 7 cut(s) 22, 28, 50, 126, 195, 214, 217
MseI TTAA 1 cut(s) 15
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 185
NlaIII CATG 2 cut(s) 178, 231
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 116
PflFI GACNNNGTC 1 cut(s) 35
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 37
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 57
SetI ASST 5 cut(s) 39, 48, 81, 158, 206
SfaNI GCATC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 4 cut(s) 90, 142, 169, 179
SspMI CTAG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 100, 117
TaiI ACGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 42, 66
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 1 cut(s) 215
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.