Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028314.1

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

94 .. 1759

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028314.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgagcgagccaattgagccctcaacgtcgtcgtcttcgaccaaagaccccgcctttctgattcaccctcggcgcgagccattcgagcatggcttgctctccatccccaagctcatcttcgccgaccccacgcaaaccctagtccctctcaagcacaagctaatcgagcaatcgccgagccaccgggtcaacgccgcagcgatctccgagtccctgcagatctccattgatctcgccaggctcgtcctcgataccctagcctcggtgcttcatttggagtccgacccgctcgtccaggccaagcccgacggggttgatgaggtcggagccgatgtgcatgatctggttttgttcctctacattcagtcctacaagaaattgctgcccagaacgcacaaggattccgccgccgttgccgatgtttggccgtcgacttcggctttcgacgggtatttgtcggctttgtcgccgttgcagcttgtgcggagcaatagccgtcggtttgtgccatcacaggctgatgaagaggcccatcagttatcatatctgcaaaagcatttgggtaacctggtctcactgttagctgaacctgtggagggggaaggcgaagaatctctggtttgtgaaatcactacttgcccttcttattttcaatgcattctttaccatgttttattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC

Protein Analysis

226

Amino Acids

24.95

Weight (kDa)

5.18

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	75
AciI	CCGC	6 cut(s)	51, 195, 287, 405, 408, 484
AcoI	YGGCCR	1 cut(s)	425
AfiI	CCNNNNNNNGG	3 cut(s)	262, 423, 596
AgsI	TTSAA	1 cut(s)	653
AjnI	CCWGG	3 cut(s)	236, 294, 567
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	112, 160, 478, 584
AluI	AGCT	4 cut(s)	112, 160, 478, 584
Alw26I	GTCTC	1 cut(s)	577
AoxI	GGCC	3 cut(s)	297, 425, 528
ApeKI	GCWGC	3 cut(s)	197, 382, 475
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	209, 369, 487
BccI	CCATC	3 cut(s)	110, 517, 540
BceAI	ACGGC	4 cut(s)	395, 412, 454, 480
BciT130I	CCWGG	3 cut(s)	238, 296, 569
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	3 cut(s)	140, 257, 679
BfmI	CTRYAG	1 cut(s)	215
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	5 cut(s)	195, 198, 383, 408, 476
BlsI	GCNGC	5 cut(s)	196, 199, 384, 409, 477
Bme1390I	CCNGG	4 cut(s)	185, 238, 296, 569
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	4 cut(s)	185, 238, 296, 569
BpiI	GAAGAC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	68, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 423, 596
BseBI	CCWGG	3 cut(s)	238, 296, 569
BseDI	CCNNGG	2 cut(s)	68, 261
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	262, 423, 596
BseXI	GCAGC	3 cut(s)	209, 369, 487
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	299, 427, 530
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	2 cut(s)	128, 196
BslI	CCNNNNNNNGG	3 cut(s)	262, 423, 596
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	128, 196
BsmI	GAATGC	1 cut(s)	657
BsnI	GGCC	3 cut(s)	299, 427, 530
Bso31I	GGTCTC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	201, 219, 229, 340
BspACI	CCGC	6 cut(s)	51, 195, 287, 405, 408, 484
BspANI	GGCC	3 cut(s)	299, 427, 530
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	577
BsrBI	CCGCTC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	68, 261
BssMI	GATC	4 cut(s)	201, 219, 229, 340
Bst2UI	CCWGG	3 cut(s)	238, 296, 569
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	2 cut(s)	94, 481
BstC8I	GCNNGC	3 cut(s)	8, 77, 95
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	204, 222, 232, 343
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	201, 219, 229, 340
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 85, 94, 166, 391, 413, 475, 481
BstNI	CCWGG	3 cut(s)	238, 296, 569
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	183, 236, 294, 567
BstSFI	CTRYAG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	209, 369, 487
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	299, 427, 530
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	8, 77, 95
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	529
CsiI	ACCWGGT	1 cut(s)	567
CviAII	CATG	3 cut(s)	89, 338, 668
DpnI	GATC	4 cut(s)	203, 221, 231, 342
DpnII	GATC	4 cut(s)	201, 219, 229, 340
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	577
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	3 cut(s)	236, 294, 567
EcoT22I	ATGCAT	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	3 cut(s)	92, 341, 671
FaiI	YATR	4 cut(s)	90, 339, 544, 669
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	128, 196
FatI	CATG	3 cut(s)	88, 337, 667
FauI	CCCGC	2 cut(s)	58, 294
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	5 cut(s)	195, 198, 383, 408, 476
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	5 cut(s)	195, 198, 383, 408, 476
FspBI	CTAG	3 cut(s)	140, 257, 679
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	5 cut(s)	195, 198, 383, 408, 476
HaeIII	GGCC	3 cut(s)	299, 427, 530
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	92, 341, 671
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	2 cut(s)	190, 432
HindII	GTYRAC	2 cut(s)	190, 432
HinfI	GANTC	5 cut(s)	61, 209, 278, 401, 611
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	190, 432
Hpy188I	TCNGA	4 cut(s)	60, 208, 283, 326
Hpy8I	GTNNAC	2 cut(s)	190, 432
Hpy99I	CGWCG	6 cut(s)	31, 34, 311, 433, 449, 501
HpyAV	CCTTC	2 cut(s)	596, 651
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	217, 337, 475, 550, 657
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 85, 94, 166, 391, 413, 475, 481
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	92, 341, 671
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	201, 219, 229, 340
LmnI	GCTCC	2 cut(s)	326, 486
Lsp1109I	GCAGC	3 cut(s)	209, 369, 487
MabI	ACCWGGT	1 cut(s)	567
MaeI	CTAG	3 cut(s)	140, 257, 679
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	4 cut(s)	203, 221, 231, 342
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	4 cut(s)	201, 219, 229, 340
MboII	GAAGA	4 cut(s)	27, 109, 536, 620
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	12, 377
MlyI	GAGTC	2 cut(s)	218, 287
MmeI	TCCRAC	2 cut(s)	304, 306
MnlI	CCTC	9 cut(s)	31, 78, 156, 257, 271, 313, 365, 520, 589
Mph1103I	ATGCAT	1 cut(s)	659
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	4 cut(s)	185, 238, 296, 569
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	657
MvaI	CCWGG	3 cut(s)	238, 296, 569
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	8 cut(s)	16, 85, 94, 166, 391, 413, 475, 481
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	201, 219, 229, 340
NlaIII	CATG	3 cut(s)	92, 341, 671
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	2 cut(s)	49, 201
NsiI	ATGCAT	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 240
PctI	GAATGC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	61, 401, 611
PkrI	GCNGC	5 cut(s)	196, 199, 384, 409, 477
PleI	GAGTC	2 cut(s)	217, 286
PpsI	GAGTC	2 cut(s)	217, 286
Psp6I	CCWGG	3 cut(s)	236, 294, 567
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	3 cut(s)	236, 294, 567
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	430
SatI	GCNGC	5 cut(s)	195, 198, 383, 408, 476
Sau3AI	GATC	4 cut(s)	201, 219, 229, 340
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	2 cut(s)	218, 287
ScrFI	CCNGG	4 cut(s)	185, 238, 296, 569
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	29, 114, 162, 324, 480, 570, 586, 592
SexAI	ACCWGGT	1 cut(s)	567
SfcI	CTRYAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	12, 377
SsiI	CCGC	6 cut(s)	51, 195, 287, 405, 408, 484
SspMI	CTAG	3 cut(s)	140, 257, 679
StyD4I	CCNGG	4 cut(s)	183, 236, 294, 567
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	6 cut(s)	38, 84, 165, 249, 431, 444
TasI	AATT	2 cut(s)	12, 377
TauI	GCSGC	2 cut(s)	197, 410
TfiI	GAWTC	3 cut(s)	61, 401, 611
TscAI	CASTG	1 cut(s)	582
TseI	GCWGC	3 cut(s)	197, 382, 475
TspDTI	ATGAA	2 cut(s)	260, 537
TspRI	CASTG	1 cut(s)	582
XmiI	GTMKAC	1 cut(s)	431
XspI	CTAG	3 cut(s)	140, 257, 679
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.