Rh3BG331800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001546
Physical Location & Seq
Forward (+)
34830787 .. 34832290
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG331800.1

Sequence Viewer

Length: 228 bp
ATGCAGTCGCCGTTAACAATATACGAGGACGAGGTCCTCGAGCTTCTTGGAGATTGTGGGCTCGATGTGGGCGAGCTTGGCCTTGGCGGTGTCGACGGTCTCGTGGTCAGGACGGTCGTCAAGGGCGTTGAGGACGGAGAGGGTCTGGGCGACATCGGAGACGGCGCGGGTCATGGCGGTGATGGCTTTGGGGTCGAAGAGGTGGGGTATCTAGTTGAGGAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.55

Weight (kDa)

4.05

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 87, 167, 177
AluBI AGCT 2 cut(s) 43, 76
AluI AGCT 2 cut(s) 43, 76
Alw26I GTCTC 2 cut(s) 104, 153
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 79, 222
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 101
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 104, 153
BfaI CTAG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 34
BoxI GACNNNNGTC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 81, 224
BsiEI CGRYCG 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 104, 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 2 cut(s) 81, 224
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 63
BspACI CCGC 3 cut(s) 87, 167, 177
BspANI GGCC 2 cut(s) 81, 224
BspFNI CGCG 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 82
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 98, 115
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 74
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 167
BstMAI GTCTC 2 cut(s) 104, 153
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 78, 183
BstPAI GACNNNNGTC 1 cut(s) 116
BstUI CGCG 1 cut(s) 167
BsuRI GGCC 2 cut(s) 81, 224
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 1 cut(s) 173
CviJI RGCY 6 cut(s) 43, 61, 76, 81, 186, 224
CviKI_1 RGCY 6 cut(s) 43, 61, 76, 81, 186, 224
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 22, 174
FatI CATG 1 cut(s) 172
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 166
HaeIII GGCC 2 cut(s) 81, 224
HhaI GCGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 2 cut(s) 15, 94
HindII GTYRAC 2 cut(s) 15, 94
HpaI GTTAAC 1 cut(s) 15
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 15, 94
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 15, 94
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 98, 115
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 183
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 1 cut(s) 165
KspAI GTTAAC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 94, 131
MaeI CTAG 1 cut(s) 212
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 63
MnlI CCTC 8 cut(s) 19, 25, 47, 124, 133, 193, 211, 214
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 177
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 78, 183
NlaIII CATG 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 38
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 69, 99, 123
PflFI GACNNNGTC 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 34
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PspXI VCTCGAGB 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 1 cut(s) 63
SetI ASST 4 cut(s) 36, 45, 78, 204
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 3 cut(s) 87, 167, 177
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 224
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 2 cut(s) 98, 115
TaqI TCGA 4 cut(s) 39, 63, 93, 195
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.