Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

4306257 .. 4308211

Gene Structure 1955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGGTGTTCGCTGCAGATCCAGCTTTACTGCTGAAGACATCAAGCAGCCCGGGAATCTGGGGTTGTAAAGGTGCAGTCAAGAAAGCAGAGATCTTTTTAGTACGAACAGATGGATTCTCTTGTACCCGAGAAAAACATATCTATGCAGAAGATAATGACCAAGTCCAAGAATTTCCTCAACAATCTCATCAAAACGTTCGGGTTCAGCTAAAGCAAAGGAACAGGTTCTCCAGTTTACAAGGAGCTTTGGCAGAGATTACAAGCATCAGTTTTGAGACGGAAGAGGGATGCTCTTTTTTGTTTTTGTTTTTCATGTCTTTTGCTTGTGTGGGTGGTTATTGGCTAATGGGTTGCTCATTTATTTTATTTGTTATATGCAAAAGGCTCCAATGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.09

Weight (kDa)

8.24

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	105, 127
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	3 cut(s)	26, 211, 248
AluI	AGCT	3 cut(s)	26, 211, 248
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	2 cut(s)	52, 129
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	14, 48
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	2 cut(s)	8, 227
AsuC2I	CCSGG	2 cut(s)	53, 54
AvaI	CYCGRG	2 cut(s)	52, 129
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	107
BcnI	CCSGG	2 cut(s)	53, 54
BcoDI	GTCTC	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	2 cut(s)	15, 49
BlsI	GCNGC	2 cut(s)	16, 50
Bme1390I	CCNGG	2 cut(s)	53, 54
BmeT110I	CYCGRG	2 cut(s)	52, 129
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	53, 54
BmsI	GCATC	2 cut(s)	276, 281
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	217
BpuMI	CCSGG	2 cut(s)	53, 54
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bse1I	ACTGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	397
BsiHKCI	CYCGRG	2 cut(s)	52, 129
BsiSI	CCGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	397
BsoBI	CYCGRG	2 cut(s)	52, 129
Bsp143I	GATC	2 cut(s)	19, 93
BspANI	GGCC	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	19, 93
Bst6I	CTCTTC	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	2 cut(s)	22, 96
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	2 cut(s)	19, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 394
BstSCI	CCNGG	2 cut(s)	51, 52
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	19, 93
BstYI	RGATCY	2 cut(s)	19, 93
BsuRI	GGCC	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	296
Cfr9I	CCCGGG	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	104, 126
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	26, 51, 211, 248, 346, 388, 397
CviKI_1	RGCY	7 cut(s)	26, 51, 211, 248, 346, 388, 397
CviQI	GTAC	2 cut(s)	104, 126
DpnI	GATC	2 cut(s)	21, 95
DpnII	GATC	2 cut(s)	19, 93
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	2 cut(s)	52, 129
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	141, 147, 317, 377, 379
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	15, 49
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	15, 49
GluI	GCNGC	2 cut(s)	15, 49
GsuI	CTGGAG	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	2 cut(s)	57, 117
HpaII	CCGG	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	17, 77, 149, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 394
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	19, 93
LmnI	GCTCC	2 cut(s)	245, 393
LpnPI	CCDG	5 cut(s)	36, 46, 66, 211, 247
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	276, 281
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	21, 95
MboI	GATC	2 cut(s)	19, 93
MboII	GAAGA	3 cut(s)	49, 164, 296
MflI	RGATCY	2 cut(s)	19, 93
MluCI	AATT	1 cut(s)	173
MnlI	CCTC	2 cut(s)	189, 280
MroXI	GAANNNNTTC	2 cut(s)	8, 227
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	53, 54
MwoI	GCNNNNNNNGC	2 cut(s)	23, 394
NciI	CCSGG	2 cut(s)	53, 54
NdeII	GATC	2 cut(s)	19, 93
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	8, 227
PfeI	GAWTC	2 cut(s)	57, 117
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	16, 50
Psp1406I	AACGTT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	19, 93
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	2 cut(s)	105, 127
RsaNI	GTAC	2 cut(s)	104, 126
RseI	CAYNNNNRTG	1 cut(s)	144
SatI	GCNGC	2 cut(s)	15, 49
Sau3AI	GATC	2 cut(s)	19, 93
ScrFI	CCNGG	2 cut(s)	53, 54
SetI	ASST	7 cut(s)	9, 28, 76, 201, 213, 230, 250
SfaNI	GCATC	2 cut(s)	276, 281
SfcI	CTRYAG	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	51, 52
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	57, 117
TseI	GCWGC	2 cut(s)	14, 48
TspDTI	ATGAA	2 cut(s)	17, 304
TspGWI	ACGGA	1 cut(s)	296
TspMI	CCCGGG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	173
XmaI	CCCGGG	1 cut(s)	52
XmnI	GAANNNNTTC	2 cut(s)	8, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.