Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

26876059 .. 26892066

Gene Structure 16008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG256800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGGTCAGCAGAGGAGACCTCGGCAGTGGGGTTGAGAGAGAAGGTGTGACGGCAGGTGAGGTGGAGCTGGATCAGACGGGCTTGGTTCAGGGCCGACGAGGCCTTGACCGACCAGTAGCGGGCCAGCACTGTGTGGTGTATAGGAAGTTGCTTGGGACTTTGTGGAAAACATTGAAGACCGACATTGTGAACTTGCTGGAAGGCTTTAATTTGACTCTGGAAGATGTTAAAGTTCAGTACAATGGGCCTTTTGTGTTGTCTAGATTAATACCTGCATTGAAAGTTCTCCTAATGACCGACAATCTCAAGACCAAGCAGCAAGCCATCAAGGCGGCTATCACTACGAATGACCCTGGCACCCTGCCCAAGTACTTTGTTCAAGAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

8.76

Isoelectric Point (pI)

17.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	2 cut(s)	47, 283
AccB1I	GGYRCC	1 cut(s)	359
AciI	CCGC	3 cut(s)	5, 122, 335
AclWI	GGATC	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	2 cut(s)	242, 374
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	178, 283, 383
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	4 cut(s)	94, 103, 124, 248
ApeKI	GCWGC	1 cut(s)	319
AseI	ATTAAT	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	94, 124, 248
AsuHPI	GGTGA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	264
BfuAI	ACCTGC	2 cut(s)	47, 283
BglI	GCCNNNNNGGC	2 cut(s)	102, 332
BisI	GCNGC	2 cut(s)	320, 336
BlsI	GCNGC	2 cut(s)	321, 337
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	94, 124, 248
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	22, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	22, 355
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	96, 105, 126, 250
BshNI	GGYRCC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	4 cut(s)	96, 105, 126, 250
Bso31I	GGTCTC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	3 cut(s)	5, 122, 335
BspANI	GGCC	4 cut(s)	96, 105, 126, 250
BspLI	GGNNCC	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	47, 283
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	22, 355
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	124, 128, 324
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 332
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	96, 105, 126, 250
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	34, 130
BveI	ACCTGC	2 cut(s)	47, 283
Cac8I	GCNNGC	3 cut(s)	124, 128, 324
Cfr13I	GGNCC	3 cut(s)	94, 124, 248
Csp6I	GTAC	2 cut(s)	241, 373
CviJI	RGCY	9 cut(s)	70, 84, 96, 105, 126, 207, 250, 326, 338
CviKI_1	RGCY	9 cut(s)	70, 84, 96, 105, 126, 207, 250, 326, 338
CviQI	GTAC	2 cut(s)	241, 373
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	355
FaiI	YATR	1 cut(s)	144
FaqI	GGGAC	1 cut(s)	172
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	320, 336
Fsp4HI	GCNGC	2 cut(s)	320, 336
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	320, 336
HaeIII	GGCC	4 cut(s)	96, 105, 126, 250
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	4 cut(s)	221, 264, 310, 383
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	38, 197
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 332
HpySE526I	ACGT	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	190, 236
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	8, 32, 55, 95
MseI	TTAA	3 cut(s)	210, 231, 269
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	102, 332
NdeII	GATC	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	49
PaqCI	CACCTGC	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	321, 337
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PshBI	ATTAAT	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	94, 124, 248
RsaI	GTAC	2 cut(s)	242, 374
RsaNI	GTAC	2 cut(s)	241, 373
SaqAI	TTAA	3 cut(s)	210, 231, 269
SatI	GCNGC	2 cut(s)	320, 336
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	3 cut(s)	94, 124, 248
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	7 cut(s)	24, 49, 61, 66, 72, 277, 392
SfiI	GGCCNNNNNGGCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	211
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	5, 122, 335
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	392
TaqII	GACCGA	3 cut(s)	126, 197, 314
TasI	AATT	1 cut(s)	211
TatI	WGTACW	2 cut(s)	240, 372
TauI	GCSGC	1 cut(s)	338
Tru1I	TTAA	3 cut(s)	210, 231, 269
Tru9I	TTAA	3 cut(s)	210, 231, 269
TscAI	CASTG	2 cut(s)	34, 137
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	2 cut(s)	34, 137
VspI	ATTAAT	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	263
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.