Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

19054547 .. 19054882

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCGAGTCACCGTTAACAATATAGGCGAGGACGAGGTCCTCGAGCTTCTTGGAGATAGTGGACTCGATGTGGGCGAGCTTGGCCTTGGTGGTGTCGACAGTCTGGTTGTCATGAAGGTCGTCGAGGGCGTTGAGGACAGAGTGGGTCTGGGCGACGTCAGAGACAGCGCGGGTCATAGCGGCGATGGCTTTGGGGTCGGAGAGGTGAGGCATCTAGTTGAGGAGGATGAAGATGGTTGCAGGGGTCATCGATCATGTGAATCGGCGAAGAGAGAGAGGTGGTTCTTAAATCTAATCGAGCTTGAATCTGTGAATTATGGAATCGGCGATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.85

Weight (kDa)

4.32

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	170, 180
AcyI	GRCGYC	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	3 cut(s)	46, 79, 301
AluI	AGCT	3 cut(s)	46, 79, 301
Alw26I	GTCTC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	37
BccI	CCATC	3 cut(s)	179, 227, 323
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	215, 334
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	85
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	170, 180
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	13, 101
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 186
BstUI	CGCG	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	111
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	250
CviAII	CATG	2 cut(s)	112, 255
CviJI	RGCY	6 cut(s)	46, 79, 84, 189, 301, 333
CviKI_1	RGCY	6 cut(s)	46, 79, 84, 189, 301, 333
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	115, 258
FaiI	YATR	5 cut(s)	23, 113, 177, 256, 318
FatI	CATG	2 cut(s)	111, 254
FauI	CCCGC	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	2 cut(s)	215, 334
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	115, 258
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	16, 97
HindII	GTYRAC	2 cut(s)	16, 97
HinfI	GANTC	5 cut(s)	6, 63, 260, 305, 321
HpaI	GTTAAC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	16, 62, 97
Hpy188I	TCNGA	2 cut(s)	161, 200
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	16, 62, 97
Hpy99I	CGWCG	2 cut(s)	125, 158
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	13, 101
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 186
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	115, 258
HspAI	GCGC	1 cut(s)	168
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	3 cut(s)	89, 134, 226
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	215, 334
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	242, 280
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	15, 57
MmeI	TCCRAC	1 cut(s)	178
MseI	TTAA	2 cut(s)	15, 287
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	81, 186
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	115, 258
NmuCI	GTSAC	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	41
PagI	TCATGA	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 72, 126
PfeI	GAWTC	3 cut(s)	260, 305, 321
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	14, 57
PpsI	GAGTC	2 cut(s)	14, 57
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	15, 287
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	15, 57
SetI	ASST	8 cut(s)	39, 48, 81, 120, 159, 207, 281, 303
SfaNI	GCATC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	170, 180
SspMI	CTAG	2 cut(s)	215, 334
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	13, 101
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	6 cut(s)	42, 66, 96, 123, 250, 297
TasI	AATT	1 cut(s)	313
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	260, 305, 321
Tru1I	TTAA	2 cut(s)	15, 287
Tru9I	TTAA	2 cut(s)	15, 287
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	128, 243
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	2 cut(s)	215, 334
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.