Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

58321995 .. 58323156

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGACCAGATCGATGGCCAAGGATCTGGGAGGGACTGTGAGGGAGAAACCCTCGGTTGTGTGCACGAGAAACGACGAGGACTCCAACGATTTTCAGCAAGAGATTACCGACGACAATGTTGAGGGAATGGATGAGCTTGTTCGTGGCGGTAACTTGAGAAGAACCTCAGGTTTGTGCTCCTGCAGCAAAGTCATATCGGGAGACGAGGCATTGCTTCTAAGCCATATTTTTGGGAATACTAAAGTTGAGGAGCGTTGTGTTTTGATGACGCAGAGGTGCCATTTGCCAGGACATGAAATACAAGTCATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

106

Amino Acids

11.63

Weight (kDa)

5.3

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	2 cut(s)	68, 182
Alw26I	GTCTC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	68, 182
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpuEI	CTTGAG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	21, 54
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 68, 98
Bse21I	CCTNAGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	21, 54
BseGI	GGATG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	68, 182
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	68, 182
Bsp143I	GATC	2 cut(s)	11, 25
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	21, 54
BssMI	GATC	2 cut(s)	11, 25
BssSI	CACGAG	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	169, 221
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	14, 28
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	11, 25
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	3 cut(s)	16, 28, 233
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	1 cut(s)	280
CviAII	CATG	2 cut(s)	296, 310
CviJI	RGCY	3 cut(s)	20, 139, 225
CviKI_1	RGCY	3 cut(s)	20, 139, 225
DdeI	CTNAG	2 cut(s)	169, 221
DpnI	GATC	2 cut(s)	13, 27
DpnII	GATC	2 cut(s)	11, 25
EaeI	YGGCCR	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	21
Eco81I	CCTNAGG	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	299, 313
FaiI	YATR	4 cut(s)	197, 228, 297, 311
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	295, 309
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	299, 313
HinfI	GANTC	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	2 cut(s)	80, 116
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	66, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	169, 221
Hsp92II	CATG	2 cut(s)	299, 313
Kzo9I	GATC	2 cut(s)	11, 25
LmnI	GCTCC	2 cut(s)	185, 253
LpnPI	CCDG	6 cut(s)	14, 22, 156, 196, 276, 303
Lsp1109I	GCAGC	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	13, 27
MboI	GATC	2 cut(s)	11, 25
MboII	GAAGA	2 cut(s)	16, 174
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	68, 182
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	9 cut(s)	26, 36, 64, 73, 118, 178, 202, 244, 270
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	2 cut(s)	11, 25
NlaIII	CATG	2 cut(s)	299, 313
NlaIV	GGNNCC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	25
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	11, 25
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	68, 182
SetI	ASST	4 cut(s)	141, 170, 175, 281
SfcI	CTRYAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	14
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	17, 312
VneI	GTGCAC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.