Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

22466373 .. 22478815

Gene Structure 12443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG117500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATTATATATGAAGAATTACAGAATGATGGTTTCAGAAGCAAGACACCTGAAAAGAGGCTAGATGATGGAGTCGGGGCAGGACCCGAAGCTGCAGTTGTTCATCCGGGCGATGTTGGGGTCGTGGTGGGAGAATTCGGTGGCGATTTCGGAGGGGGTGATGAAGGAGAGTTTGGGTCGCCGTTGAGGGTGTGGTTACGGGAGGGGGTTGTGGTTGGGACGGTCACCGAGGGCTTTCAGGACGGAGCAGGTCTAGACGACGTTGGAGACAGCGCTGGTCATGGCGGCGATGACTTTGGGGTAAGAGAGGTACGGCATCTGGCTGAGGAGGATGAGGATGGTTGTTGGGGTATAAACAACTGTGGCTGGCCACATTTGTGTGCTGATGGTATTGAAAGCACAGAGTCCTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.44

Weight (kDa)

4.14

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AciI	CCGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	312
AfeI	AGCGCT	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	376
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	170, 217
AvaII	GGWCC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	4 cut(s)	23, 62, 332, 380
BceAI	ACGGC	2 cut(s)	166, 329
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	2 cut(s)	62, 254
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	93, 286
BlsI	GCNGC	2 cut(s)	94, 287
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	103, 337, 343
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	223, 362
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	103, 337, 343
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	261
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	370
BtgZI	GCGATG	2 cut(s)	126, 303
BtsCI	GGATG	3 cut(s)	103, 337, 343
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	368
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	6 cut(s)	61, 92, 234, 323, 366, 370
CviKI_1	RGCY	6 cut(s)	61, 92, 234, 323, 366, 370
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	134
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	8, 10, 12, 282, 353
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	93, 286
FokI	GGATG	3 cut(s)	90, 344, 350
Fsp4HI	GCNGC	2 cut(s)	93, 286
FspBI	CTAG	2 cut(s)	62, 254
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	93, 286
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	72, 404
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	2 cut(s)	170, 217
Hpy188I	TCNGA	2 cut(s)	38, 152
Hpy188III	TCNNGA	2 cut(s)	239, 254
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	223, 362
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	8 cut(s)	63, 66, 120, 224, 234, 261, 305, 352
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	62, 254
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	195, 223
MboII	GAAGA	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	2 cut(s)	17, 134
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	81, 413
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	51, 146, 180, 196, 223, 301, 319, 322, 328
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MslI	CAYNNNNRTG	2 cut(s)	376, 378
Msp20I	TGGCCA	1 cut(s)	370
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
NciI	CCSGG	1 cut(s)	108
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	94, 287
PleI	GAGTC	2 cut(s)	80, 412
PpsI	GAGTC	2 cut(s)	80, 412
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	83
PspPPI	RGGWCCY	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	2 cut(s)	376, 378
SatI	GCNGC	2 cut(s)	93, 286
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	2 cut(s)	81, 413
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	5 cut(s)	52, 94, 253, 264, 312
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	376, 378
Sse9I	AATT	2 cut(s)	17, 134
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	62, 254
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	223, 362
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	17, 134
TauI	GCSGC	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	27, 92, 177
TspGWI	ACGGA	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	253
XspI	CTAG	2 cut(s)	62, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.