Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

48011892 .. 48014325

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG332700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAAGACCAGATCGATGGCCAAGGATCTGAGCAGGACTGTGAAGGAGAAACTTTCGGTTGTGTGCACGATCAACGGCAAGGACCCCAAGGATTTTCAGCAAGAGATTACTGCGGCGATGTTGAGAGGGTCACTGATTGTGTACAAGACGGGGATCAGGGGATGGGTAAAGTTTTGGTTGATGCCAGAGTTGGGCTACCACTTTTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0009941 GO:0009987 GO:0010109 GO:0010205 GO:0016053 GO:0019222 GO:0019752 GO:0019904 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0032787 GO:0042548 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0072330 GO:1901576 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko02020 map02020

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

70

Amino Acids

8.15

Weight (kDa)

9.66

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	33, 161
AcoI	YGGCCR	1 cut(s)	18
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	191, 205
Alw21I	GWGCWC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	33, 161
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	2 cut(s)	10, 156
BceAI	ACGGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	21, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 205
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	21, 87
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	191, 205
BseMII	CTCAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	191, 205
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	11, 25, 69, 153
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	33, 161
BsrGI	TGTACA	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	21, 87
BssMI	GATC	4 cut(s)	11, 25, 69, 153
BssT1I	CCWWGG	2 cut(s)	21, 87
Bst4CI	ACNGT	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	4 cut(s)	14, 28, 72, 156
BstMBI	GATC	4 cut(s)	11, 25, 69, 153
BstSLI	GKGCMC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	2 cut(s)	20, 195
CviKI_1	RGCY	2 cut(s)	20, 195
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	4 cut(s)	13, 27, 71, 155
DpnII	GATC	4 cut(s)	11, 25, 69, 153
EaeI	YGGCCR	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	21, 87
Eco47I	GGWCC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	21, 87
ErhI	CCWWGG	2 cut(s)	21, 87
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	66, 142
Hpy188I	TCNGA	1 cut(s)	30
Hpy8I	GTNNAC	2 cut(s)	66, 142
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	29
Kzo9I	GATC	4 cut(s)	11, 25, 69, 153
LpnPI	CCDG	4 cut(s)	19, 22, 142, 198
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	4 cut(s)	13, 27, 71, 155
MboI	GATC	4 cut(s)	11, 25, 69, 153
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	1 cut(s)	20
MluNI	TGGCCA	1 cut(s)	20
MnlI	CCTC	1 cut(s)	119
Mox20I	TGGCCA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
NdeII	GATC	4 cut(s)	11, 25, 69, 153
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	11, 25, 69, 153
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	68
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	1 cut(s)	113
StyI	CCWWGG	2 cut(s)	21, 87
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	14
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	116
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	138
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.