Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

52967982 .. 52970448

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG307700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTCTCGGGTGCATGGCCACCACGCGTATCAATTGCTGCTGCTGGAAGCCTGGAACAATCTAAGCCTAAGATCAGTGGCTAAACTTCCTCTGGGAGTTTGTGCTCCTACAACAAAGGGCAAAAGTCCAGATATGATCATGTTCTTTCTGCACTTTCAAAGATTAAGAGTGATCTGGAGTGGGTGCTACTGGTCAAATTGGGAGACAAGCCAGTGTTTCAATTGCAGTGACAGATGGAAAACTGATCTCCCTGAATCACCTTTAACATTTTATGGGCCAAAGAGTGTTCTGATTCATATGGTACCCACTGATGAGGCAGATGCATTTTACCAGTCGTTATTCATTATGTTGTCTTCAAGTAGTTTTGGATGGCTTGAACTGGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

129

Amino Acids

14.84

Weight (kDa)

6.95

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	301
AccII	CGCG	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	16
AfaI	GTAC	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	158, 220, 357, 377
AjnI	CCWGG	1 cut(s)	50
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	9, 197
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	2 cut(s)	16, 275
ApeKI	GCWGC	2 cut(s)	37, 40
Asp718I	GGTACC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	24, 27
BccI	CCATC	2 cut(s)	228, 363
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	9, 197
BisI	GCNGC	2 cut(s)	38, 41
BlsI	GCNGC	2 cut(s)	39, 42
Bme1390I	CCNGG	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	196
Bse1I	ACTGG	4 cut(s)	194, 211, 331, 384
BseBI	CCWGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	374
BseNI	ACTGG	4 cut(s)	194, 211, 331, 384
BseXI	GCAGC	2 cut(s)	24, 27
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	18, 277
BshNI	GGYRCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	6
BsmAI	GTCTC	2 cut(s)	9, 197
BsnI	GGCC	2 cut(s)	18, 277
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	71, 135, 171, 244
BspANI	GGCC	2 cut(s)	18, 277
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BsrI	ACTGG	4 cut(s)	194, 211, 331, 384
BssMI	GATC	4 cut(s)	71, 135, 171, 244
Bst2UI	CCWGG	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	62, 68
BstF5I	GGATG	1 cut(s)	374
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	4 cut(s)	74, 138, 174, 247
BstMAI	GTCTC	2 cut(s)	9, 197
BstMBI	GATC	4 cut(s)	71, 135, 171, 244
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	24, 27
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	18, 277
BtsCI	GGATG	1 cut(s)	374
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	4 cut(s)	81, 218, 232, 306
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	2 cut(s)	14, 139
CviJI	RGCY	7 cut(s)	18, 50, 66, 80, 210, 277, 373
CviKI_1	RGCY	7 cut(s)	18, 50, 66, 80, 210, 277, 373
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	62, 68
DpnI	GATC	4 cut(s)	73, 137, 173, 246
DpnII	GATC	4 cut(s)	71, 135, 171, 244
EaeI	YGGCCR	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	325
FaeI	CATG	2 cut(s)	17, 142
FaiI	YATR	7 cut(s)	15, 134, 140, 273, 297, 299, 347
FatI	CATG	2 cut(s)	13, 138
FauNDI	CATATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	38, 41
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	38, 41
GluI	GCNGC	2 cut(s)	38, 41
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	18, 277
Hin1II	CATG	2 cut(s)	17, 142
HinfI	GANTC	2 cut(s)	254, 292
HphI	GGTGA	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	128, 175
HpyCH4V	TGCA	4 cut(s)	13, 151, 225, 323
HpyF3I	CTNAG	2 cut(s)	62, 68
Hsp92II	CATG	2 cut(s)	17, 142
KpnI	GGTACC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	71, 135, 171, 244
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	2 cut(s)	24, 27
LweI	GCATC	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	4 cut(s)	73, 137, 173, 246
MboI	GATC	4 cut(s)	71, 135, 171, 244
MboII	GAAGA	1 cut(s)	345
MfeI	CAATTG	2 cut(s)	32, 220
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	3 cut(s)	32, 196, 220
MluI	ACGCGT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	18
MnlI	CCTC	2 cut(s)	99, 307
Mox20I	TGGCCA	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	18
MseI	TTAA	2 cut(s)	164, 263
Msp20I	TGGCCA	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	2 cut(s)	32, 220
MvaI	CCWGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	4 cut(s)	71, 135, 171, 244
NlaIII	CATG	2 cut(s)	17, 142
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	254, 292
PkrI	GCNGC	2 cut(s)	39, 42
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	164, 263
SatI	GCNGC	2 cut(s)	38, 41
Sau3AI	GATC	4 cut(s)	71, 135, 171, 244
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	310
Sse9I	AATT	3 cut(s)	32, 196, 220
StyD4I	CCNGG	1 cut(s)	50
TasI	AATT	3 cut(s)	32, 196, 220
TfiI	GAWTC	2 cut(s)	254, 292
Tru1I	TTAA	2 cut(s)	164, 263
Tru9I	TTAA	2 cut(s)	164, 263
TscAI	CASTG	4 cut(s)	81, 218, 232, 313
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	37, 40
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	284, 331
TspRI	CASTG	4 cut(s)	81, 218, 232, 313
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.