Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

77264116 .. 77266108

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG543400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAGATCGCCAAGATCATGAAGACCAGATCGATGGCCAAGGATCTGAGCGGGACTGTGAGGGAGAAACTCTCGGTTGTGTGCGCGATCAACGACGAGGACTCCAACGATTTTCAGCAAGAGATTACCGACGACGATGTTGAGGGAATGGATGAGCTTGTTCGTGGCGGTAACATGAGAAAAACTTCACATCCGATCATGTTCTTTTTGCACTTTCAAAGATTAAGAGTGATCTGGAGTAGGTGCTACTGGTCATATCGGGAGACGAGGCATTGCTTCTATACACTCAGATTGAGATTTGCAGTTGTTTGCTTCATTGTTTTTGTGCATGGCAGAGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGCTTGGTGTTAAGTGGCAGGACATGAAATACAAGTCATGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATCAGAGAGCATGCTTCAATCCATCGATCTTCAAAGTCAATTTCTTGGAGTCTCCTATTCCCAATACTGCTGCATTCTTTGGTGAAATTGGACTGTGGTGAACTTCACCCGGTTAGCCTATTGTTCATATATTTTCTGAATATTATTGGCACTTCTGATCATGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008374 GO:0008780 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 ko01503 map00540 map01100 map01503

Pfam Domains

Protein Families

Acetyltransf_11 Hexapep

Protein Analysis

218

Amino Acids

25.18

Weight (kDa)

6.35

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	51
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	51, 168
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	218, 504, 519
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	257, 542
AlwI	GGATC	1 cut(s)	51
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	556
Asp700I	GAANNNNTTC	2 cut(s)	184, 459
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	363, 596
AsuHPI	GGTGA	4 cut(s)	362, 580, 584, 596
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	28, 516
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	363, 596
BcoDI	GTCTC	2 cut(s)	257, 542
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	363, 596
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	2 cut(s)	363, 596
BpiI	GAAGAC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	363, 596
Bsa29I	ATCGAT	2 cut(s)	32, 511
BsaJI	CCNNGG	2 cut(s)	39, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	271
BseCI	ATCGAT	2 cut(s)	32, 511
BseDI	CCNNGG	2 cut(s)	39, 362
BseGI	GGATG	3 cut(s)	157, 190, 457
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	38, 301
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	543
BseYI	CCCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	338
BshVI	ATCGAT	2 cut(s)	32, 511
BsiSI	CCGG	2 cut(s)	362, 596
BslFI	GGGAC	2 cut(s)	67, 488
BsmAI	GTCTC	2 cut(s)	257, 542
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	67, 488
BsmI	GAATGC	2 cut(s)	461, 559
BsnI	GGCC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	51, 168
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	39, 300
BspDI	ATCGAT	2 cut(s)	32, 511
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	2 cut(s)	18, 646
BspLI	GGNNCC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	39, 362
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	3 cut(s)	58, 373, 581
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	47, 287
BstF5I	GGATG	3 cut(s)	157, 190, 457
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstMAI	GTCTC	2 cut(s)	257, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	361, 594
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	543
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	43
Bsu15I	ATCGAT	2 cut(s)	32, 511
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	2 cut(s)	32, 511
BtsCI	GGATG	3 cut(s)	157, 190, 457
Cac8I	GCNNGC	1 cut(s)	498
CciI	TCATGA	2 cut(s)	18, 646
CfoI	GCGC	1 cut(s)	86
ClaI	ATCGAT	2 cut(s)	32, 511
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	9 cut(s)	19, 175, 199, 329, 404, 433, 447, 497, 647
CviJI	RGCY	3 cut(s)	38, 157, 603
CviKI_1	RGCY	3 cut(s)	38, 157, 603
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	47, 287
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	401
EcoRV	GATATC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	9 cut(s)	22, 178, 202, 332, 407, 436, 450, 500, 650
FaqI	GGGAC	2 cut(s)	67, 488
FatI	CATG	9 cut(s)	18, 174, 198, 328, 403, 432, 446, 496, 646
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	164, 177, 464
Fsp4HI	GCNGC	1 cut(s)	557
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	557
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	2 cut(s)	362, 596
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	9 cut(s)	22, 178, 202, 332, 407, 436, 450, 500, 650
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	101, 535
HpaII	CCGG	2 cut(s)	362, 596
HphI	GGTGA	4 cut(s)	362, 580, 584, 596
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	6 cut(s)	48, 195, 290, 491, 624, 643
Hpy188III	TCNNGA	5 cut(s)	19, 235, 260, 464, 647
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	3 cut(s)	98, 134, 137
HpyCH4III	ACNGT	3 cut(s)	58, 373, 581
HpyCH4V	TGCA	5 cut(s)	211, 302, 328, 384, 559
HpyF10VI	GCNNNNNNNGC	1 cut(s)	373
HpyF3I	CTNAG	2 cut(s)	47, 287
Hsp92II	CATG	9 cut(s)	22, 178, 202, 332, 407, 436, 450, 500, 650
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	643
LpnPI	CCDG	7 cut(s)	40, 220, 235, 362, 375, 413, 609
Lsp1109I	GCAGC	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	170
MbiI	CCGCTC	1 cut(s)	51
MboII	GAAGA	3 cut(s)	34, 350, 507
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	525, 572
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	95, 544
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	54, 91, 136, 261, 329
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	2 cut(s)	184, 459
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	224, 420
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	2 cut(s)	362, 596
MspR9I	CCNGG	2 cut(s)	363, 596
Mva1269I	GAATGC	2 cut(s)	461, 559
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	363, 596
NlaIII	CATG	9 cut(s)	22, 178, 202, 332, 407, 436, 450, 500, 650
NlaIV	GGNNCC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	500
PaeI	GCATGC	1 cut(s)	500
PagI	TCATGA	2 cut(s)	18, 646
PctI	GAATGC	2 cut(s)	461, 559
PdmI	GAANNNNTTC	2 cut(s)	184, 459
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	2 cut(s)	95, 543
PpsI	GAGTC	2 cut(s)	95, 543
PspFI	CCCAGC	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	224, 420
SatI	GCNGC	1 cut(s)	557
SchI	GAGTC	2 cut(s)	95, 544
ScrFI	CCNGG	2 cut(s)	363, 596
SetI	ASST	3 cut(s)	159, 245, 340
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	2 cut(s)	525, 572
SsiI	CCGC	2 cut(s)	51, 168
SspI	AATATT	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	361, 594
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	58, 373, 581
TaqI	TCGA	2 cut(s)	32, 511
TasI	AATT	2 cut(s)	525, 572
Tru1I	TTAA	2 cut(s)	224, 420
Tru9I	TTAA	2 cut(s)	224, 420
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	5 cut(s)	35, 304, 449, 468, 601
XceI	RCATGY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	184, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.