Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

18006706 .. 18017841

Gene Structure 11136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATTGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACTTATTTGGATTTTGTGACCTTACTTATGGACTCAGCAATTTTGTTCCATCGGAATTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTAGTCTTAGCTGGCCTCAATGCCCAAAATGAAATACTACATAACCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGATCACAGACTTACCATTCTCTCTGTACTCCACATTTGTGATCGAGGCTCGTCATGGTTTCAATAATTGCGCCCCCTGCAAACTCTGCTACTTGGACTCTAGGAGGCTAGATGATGGAGTCGGGGCAGGACCTGAAGCTACAGTTGTTGATTCGGGCGAAGTTAGGGTCGTGGTGGGAGAATTCAGCCGCGATTTCGGAGGGGGTGATGAAGGAGAGTTTGGATCGCCGTTAAGGGTATGGTTGGGGGAGGAGGTTGTGGTCGGGACAGTCGCCGAGGGCATTGAGGACGGAGTGGGTCTGGGCGATGTCGGAGACGGTGCGGGTCATAGCGGCGATGACTTTGGGGTCGAAGAGGTAGGGCATCTGGCTGAGGAGGATGAGGATGGTTGCTGGGAAATTTGTCTTTCTGTTATTATTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTAGAGAAAGGAGGTGCTTACTTGTTCACCCCTCTTCCTGAGGGTCAGCTAAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGTCACAGCAATGCCTATGTGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGATCCGTATGCTTTTACACTTGGGGGGATATGCTCATCTGAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTAATCATTGGTCTCATCATATTTCGGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCGCTTCGAGCTAGTCTTGTTAGACTACAGGAAGAGTATTTGTCAGCTATGAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTTGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

437

Amino Acids

48.41

Weight (kDa)

5.21

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	42 - 119	1.6e-17	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	256 - 315	7.2e-12	Peptidase family M48
Peptidase_M48	PF01435	321 - 430	5.1e-12	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	206, 629
AccII	CGCG	1 cut(s)	474
AciI	CCGC	4 cut(s)	76, 472, 605, 615
AclWI	GGATC	5 cut(s)	514, 862, 928, 937, 1217
AcsI	RAATTY	4 cut(s)	169, 464, 681, 1121
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	4 cut(s)	50, 311, 1086, 1232
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	59, 346, 832, 1121
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 486, 518
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	9 cut(s)	23, 215, 263, 422, 784, 805, 1115, 1175, 1211
AluI	AGCT	9 cut(s)	23, 215, 263, 422, 784, 805, 1115, 1175, 1211
Alw26I	GTCTC	3 cut(s)	192, 591, 1046
AlwI	GGATC	5 cut(s)	514, 862, 928, 937, 1217
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	86, 1277
ApoI	RAATTY	4 cut(s)	169, 464, 681, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	500, 754, 1298
AvaII	GGWCC	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	73, 1264
BccI	CCATC	4 cut(s)	171, 392, 662, 845
BceAI	ACGGC	1 cut(s)	496
BcoDI	GTCTC	3 cut(s)	192, 591, 1046
BfaI	CTAG	4 cut(s)	384, 392, 1082, 1176
BfmI	CTRYAG	2 cut(s)	423, 1190
BisI	GCNGC	4 cut(s)	87, 472, 616, 1278
BlsI	GCNGC	4 cut(s)	88, 473, 617, 1279
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmsI	GCATC	2 cut(s)	655, 1123
BpmI	CTGGAG	1 cut(s)	973
Bpu10I	CCTNAGC	2 cut(s)	654, 785
BpuEI	CTTGAG	1 cut(s)	803
BsaI	GGTCTC	1 cut(s)	1046
BsaJI	CCNNGG	3 cut(s)	176, 558, 1226
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	1028
Bse21I	CCTNAGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	176, 558, 1226
BseGI	GGATG	3 cut(s)	667, 673, 1252
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	4 cut(s)	162, 645, 765, 971
BseNI	ACTGG	1 cut(s)	1028
BseRI	GAGGAG	2 cut(s)	548, 671
BseXI	GCAGC	2 cut(s)	73, 1264
BseYI	CCCAGC	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	3 cut(s)	192, 591, 1046
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	1046
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
BspACI	CCGC	4 cut(s)	76, 472, 605, 615
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	4 cut(s)	161, 646, 766, 972
BspFNI	CGCG	1 cut(s)	474
BspPI	GGATC	5 cut(s)	514, 862, 928, 937, 1217
BspTNI	GGTCTC	1 cut(s)	1046
BsrDI	GCAATG	1 cut(s)	883
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	1028
BssECI	CCNNGG	3 cut(s)	176, 558, 1226
BssMI	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
BssT1I	CCWWGG	2 cut(s)	176, 1226
Bst4CI	ACNGT	3 cut(s)	427, 553, 602
Bst6I	CTCTTC	4 cut(s)	630, 774, 1168, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	217, 807, 1096
BstDEI	CTNAG	8 cut(s)	148, 211, 654, 774, 785, 980, 1004, 1143
BstF5I	GGATG	3 cut(s)	667, 673, 1252
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	7 cut(s)	288, 327, 509, 857, 936, 945, 1225
BstMAI	GTCTC	3 cut(s)	192, 591, 1046
BstMBI	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 360, 369
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	2 cut(s)	423, 1190
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	73, 1264
BstX2I	RGATCY	2 cut(s)	854, 942
BstYI	RGATCY	2 cut(s)	854, 942
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	219
BtgZI	GCGATG	2 cut(s)	603, 633
BtsCI	GGATG	3 cut(s)	667, 673, 1252
BtsIMutI	CAGTG	1 cut(s)	929
Cac8I	GCNNGC	3 cut(s)	217, 807, 1096
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	4 cut(s)	49, 310, 1085, 1231
CviAII	CATG	2 cut(s)	83, 338
CviQI	GTAC	4 cut(s)	49, 310, 1085, 1231
DdeI	CTNAG	8 cut(s)	148, 211, 654, 774, 785, 980, 1004, 1143
DpnI	GATC	7 cut(s)	287, 326, 508, 856, 935, 944, 1224
DpnII	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
DrdI	GACNNNNNNGTC	2 cut(s)	206, 629
DseDI	GACNNNNNNGTC	2 cut(s)	206, 629
Eam1104I	CTCTTC	4 cut(s)	630, 774, 1168, 1191
EarI	CTCTTC	4 cut(s)	630, 774, 1168, 1191
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	176, 1226
Eco31I	GGTCTC	1 cut(s)	1046
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	176, 1226
ErhI	CCWWGG	2 cut(s)	176, 1226
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	2 cut(s)	86, 341
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	82, 337
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	87, 472, 616, 1278
FokI	GGATG	3 cut(s)	674, 680, 1239
Fsp4HI	GCNGC	4 cut(s)	87, 472, 616, 1278
FspBI	CTAG	4 cut(s)	384, 392, 1082, 1176
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	4 cut(s)	87, 472, 616, 1278
GsaI	CCCAGC	1 cut(s)	679
GsuI	CTGGAG	1 cut(s)	973
HaeIII	GGCC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	86, 341
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HinfI	GANTC	4 cut(s)	146, 380, 402, 434
HphI	GGTGA	3 cut(s)	500, 754, 1298
Hpy166II	GTNNAC	2 cut(s)	762, 1087
Hpy188I	TCNGA	5 cut(s)	93, 168, 482, 596, 981
Hpy188III	TCNNGA	3 cut(s)	195, 547, 773
Hpy8I	GTNNAC	2 cut(s)	762, 1087
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	427, 553, 602
HpyCH4V	TGCA	3 cut(s)	363, 722, 1280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 360, 369
HpyF3I	CTNAG	8 cut(s)	148, 211, 654, 774, 785, 980, 1004, 1143
Hsp92II	CATG	2 cut(s)	86, 341
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
Lsp1109I	GCAGC	2 cut(s)	73, 1264
LweI	GCATC	2 cut(s)	655, 1123
MaeI	CTAG	4 cut(s)	384, 392, 1082, 1176
MaeIII	GTNAC	2 cut(s)	130, 869
MalI	GATC	7 cut(s)	287, 326, 508, 856, 935, 944, 1224
MboI	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
MboII	GAAGA	7 cut(s)	199, 647, 761, 804, 844, 1155, 1208
MfeI	CAATTG	1 cut(s)	1281
MflI	RGATCY	2 cut(s)	854, 942
MluCI	AATT	9 cut(s)	153, 169, 349, 464, 681, 732, 795, 1121, 1281
MlyI	GAGTC	3 cut(s)	140, 374, 411
MmeI	TCCRAC	2 cut(s)	125, 574
MseI	TTAA	2 cut(s)	515, 900
MslI	CAYNNNNRTG	2 cut(s)	320, 876
MunI	CAATTG	1 cut(s)	1281
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	260, 360, 369
NdeII	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
NlaIII	CATG	2 cut(s)	86, 341
NmeAIII	GCCGAG	3 cut(s)	583, 1136, 1214
NmuCI	GTSAC	2 cut(s)	130, 869
NspI	RCATGY	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	88, 473, 617, 1279
PleI	GAGTC	3 cut(s)	140, 374, 410
PpsI	GAGTC	3 cut(s)	140, 374, 410
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
PspFI	CCCAGC	1 cut(s)	675
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	854, 942
RsaI	GTAC	4 cut(s)	50, 311, 1086, 1232
RsaNI	GTAC	4 cut(s)	49, 310, 1085, 1231
RseI	CAYNNNNRTG	2 cut(s)	320, 876
SaqAI	TTAA	2 cut(s)	515, 900
SatI	GCNGC	4 cut(s)	87, 472, 616, 1278
Sau3AI	GATC	7 cut(s)	285, 324, 506, 854, 933, 942, 1222
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	3 cut(s)	140, 374, 411
SfaNI	GCATC	2 cut(s)	655, 1123
SfcI	CTRYAG	2 cut(s)	423, 1190
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	320, 876
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	9 cut(s)	153, 169, 349, 464, 681, 732, 795, 1121, 1281
SsiI	CCGC	4 cut(s)	76, 472, 605, 615
SspMI	CTAG	4 cut(s)	384, 392, 1082, 1176
StyI	CCWWGG	2 cut(s)	176, 1226
TaaI	ACNGT	3 cut(s)	427, 553, 602
TaqI	TCGA	4 cut(s)	327, 633, 1171, 1266
TasI	AATT	9 cut(s)	153, 169, 349, 464, 681, 732, 795, 1121, 1281
TatI	WGTACW	3 cut(s)	48, 309, 1084
TauI	GCSGC	2 cut(s)	474, 618
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	515, 900
Tru9I	TTAA	2 cut(s)	515, 900
TscAI	CASTG	1 cut(s)	936
TseFI	GTSAC	2 cut(s)	130, 869
TseI	GCWGC	2 cut(s)	86, 1277
Tsp45I	GTSAC	2 cut(s)	130, 869
TspDTI	ATGAA	3 cut(s)	249, 507, 1229
TspGWI	ACGGA	2 cut(s)	588, 935
TspRI	CASTG	1 cut(s)	936
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	4 cut(s)	169, 464, 681, 1121
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	4 cut(s)	384, 392, 1082, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.