RLG00000011435

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001546
Physical Location & Seq
Reverse (-)
9450879 .. 9451429
551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011435

Sequence Viewer

Length: 435 bp
ATGGTCCTCTACACCGGCTCCGACTTTGTTTGGCTCCAGTGCGCTCCCTGCAAACACTGCTACTTGGACTCTAGGAAGCTGGATGATGGAGTCGGGGCAGGACCCGAAGCTGCAGTTGTTGATCCGGGCGACGTTGGGGTTGTGGTGGGAGAATTCGGCGGTGATTTCGGAGGGGGTGATGAAGGAGAGTTTGGATTGCCGTTAAGGGTGTGGTTGTGGGAGGAAGTTGTGGTCGGGACGGTCGCCGAGGGCGTTGAGGACGGAGAGGGTTTGGGCGACGTCGGAGACAGCGCTAGTCATGGCGACGATGACTTTGGGGTCGGAGAGGTGGGGCATCTGGCTGAGGAGGATGAGGATGGTTGTTGGGGCATGATCAACTGGGGCTGGCCATGTTTGTGTGTTGATGGTGTTGAAAGCACAGAGTCCTCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

145

Amino Acids

15.05

Weight (kDa)

4.05

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AatII GACGTC 1 cut(s) 282
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 2 cut(s) 79, 110
AluI AGCT 2 cut(s) 79, 110
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 292
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 2 cut(s) 44, 293
AspS9I GGNCC 2 cut(s) 4, 101
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 173, 188
AvaII GGWCC 2 cut(s) 4, 101
BalI TGGCCA 1 cut(s) 388
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 80, 350, 398
BceAI ACGGC 1 cut(s) 184
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 2 cut(s) 72, 294
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 4, 101
BmgT120I GGNCC 2 cut(s) 4, 101
BmiI GGNNCC 3 cut(s) 19, 35, 103
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 37, 383
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 88, 355, 361
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 2 cut(s) 37, 383
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 388
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 15, 125
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 388
Bsp143I GATC 2 cut(s) 121, 372
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 3 cut(s) 19, 35, 103
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 2 cut(s) 37, 383
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 121, 372
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 88, 355, 361
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 44, 293
BstKTI GATC 2 cut(s) 124, 375
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 2 cut(s) 121, 372
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 48, 57
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 3 cut(s) 88, 355, 361
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 44, 55
Cac8I GCNNGC 1 cut(s) 386
CfoI GCGC 2 cut(s) 44, 293
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 4, 101
CviAII CATG 3 cut(s) 299, 370, 390
CviJI RGCY 7 cut(s) 18, 34, 79, 110, 341, 384, 388
CviKI_1 RGCY 7 cut(s) 18, 34, 79, 110, 341, 384, 388
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 123, 374
DpnII GATC 2 cut(s) 121, 372
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 4, 101
Eco47III AGCGCT 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 152
FaeI CATG 3 cut(s) 302, 373, 393
FaiI YATR 3 cut(s) 300, 371, 391
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 298, 369, 389
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 3 cut(s) 95, 362, 368
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 72, 294
GlaI GCGC 2 cut(s) 43, 292
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 388
HapII CCGG 2 cut(s) 15, 125
HhaI GCGC 2 cut(s) 44, 293
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 3 cut(s) 302, 373, 393
Hin6I GCGC 2 cut(s) 42, 291
HinP1I GCGC 2 cut(s) 42, 291
HinfI GANTC 3 cut(s) 68, 90, 422
HpaII CCGG 2 cut(s) 15, 125
HphI GGTGA 2 cut(s) 173, 188
Hpy188I TCNGA 4 cut(s) 22, 170, 284, 323
Hpy188III TCNNGA 1 cut(s) 235
Hpy99I CGWCG 4 cut(s) 134, 281, 284, 308
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 132, 279
HpyCH4V TGCA 2 cut(s) 51, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 57
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 132, 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 3 cut(s) 302, 373, 393
HspAI GCGC 2 cut(s) 42, 291
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 121, 372
LmnI GCTCC 3 cut(s) 23, 39, 49
LpnPI CCDG 9 cut(s) 28, 50, 61, 65, 84, 138, 323, 364, 370
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 72, 294
MaeII ACGT 2 cut(s) 132, 279
MalI GATC 2 cut(s) 123, 374
MboI GATC 2 cut(s) 121, 372
MlsI TGGCCA 1 cut(s) 388
MluCI AATT 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 388
MlyI GAGTC 3 cut(s) 62, 99, 431
MmeI TCCRAC 3 cut(s) 45, 262, 301
Mox20I TGGCCA 1 cut(s) 388
MscI TGGCCA 1 cut(s) 388
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 394
Msp20I TGGCCA 1 cut(s) 388
MspI CCGG 2 cut(s) 15, 125
MspR9I CCNGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 48, 57
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 121, 372
NlaIII CATG 3 cut(s) 302, 373, 393
NlaIV GGNNCC 3 cut(s) 19, 35, 103
NmeAIII GCCGAG 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 3 cut(s) 62, 98, 430
PpsI GAGTC 3 cut(s) 62, 98, 430
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 19, 35, 103
PspPI GGNCC 2 cut(s) 4, 101
PspPPI RGGWCCY 1 cut(s) 101
PstI CTGCAG 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 394
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 121, 372
Sau96I GGNCC 2 cut(s) 4, 101
SchI GAGTC 3 cut(s) 62, 99, 431
ScrFI CCNGG 1 cut(s) 126
SetI ASST 5 cut(s) 81, 112, 135, 282, 330
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 2 cut(s) 4, 101
SmiMI CAYNNNNRTG 1 cut(s) 394
Sse9I AATT 1 cut(s) 152
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 72, 294
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 135, 282
TasI AATT 1 cut(s) 152
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 44, 62
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 44, 62
VpaK11BI GGWCC 2 cut(s) 4, 101
XapI RAATTY 1 cut(s) 152
XspI CTAG 2 cut(s) 72, 294
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.