Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

21855480 .. 21875011

Gene Structure 19532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCCTCACGAGGCTCGATGCTCATCCTACTCCAGACCCGAAGCTGCAGTTATTGATCCGGGTGAAGTTGGGGTCGTGGTGGGAGAATTCGGCGGCGATTTCGGAGGGGGTGATGAGGGAGAGTTTGGATCACCGTTGAGGGTGTGGTTGCGGGAGGAGGTTGTGGTCGGGACGGTCGCCGAGGGCGTTGAGGATAGAGTGGGTCTGGGCGACGTCAGAGACGGCGCGGGTCATGGCGGCGATGACTTTGGGGTCGGAGAGGTGGGGCATCTGGCTGAGGAGGATGAGGATGGTTGCTGGGTTGCAGCTAATCAGCTATATCTCAAAGTTGAGCCACCCCCAACAGCTAATGGCAGGAAATTTGGTGGGAATCCAGTTGTGGCAGTGTTTTACCTGGAGGACAAGTTTGCTCATGGTGCAGCGAAGAAGAAAAAGAAGAAGAGGGATATTCATTGTGACCAAACCGTTCATATAGTAGATTTGTTGGGTCAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0008187 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0036002 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0071004 GO:0071010 GO:0089701 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

165

Amino Acids

17.51

Weight (kDa)

4.78

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AatII	GACGTC	1 cut(s)	216
AccII	CGCG	1 cut(s)	227
AciI	CCGC	4 cut(s)	93, 151, 227, 237
AclWI	GGATC	2 cut(s)	50, 136
AcsI	RAATTY	2 cut(s)	86, 359
AcyI	GRCGYC	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	44, 308, 316, 347
AluI	AGCT	4 cut(s)	44, 308, 316, 347
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	2 cut(s)	50, 136
ApeKI	GCWGC	3 cut(s)	44, 305, 419
ApoI	RAATTY	2 cut(s)	86, 359
AspLEI	GCGC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	74, 122, 123
BauI	CACGAG	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	31, 317, 431
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	5 cut(s)	45, 94, 238, 306, 420
BlsI	GCNGC	5 cut(s)	46, 95, 239, 307, 421
Bme1390I	CCNGG	2 cut(s)	60, 395
BmrFI	CCNGG	2 cut(s)	60, 395
BmsI	GCATC	2 cut(s)	8, 277
BpmI	CTGGAG	2 cut(s)	16, 416
Bpu10I	CCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse1I	ACTGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	23, 289, 295
BseJI	GATNNNNATC	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	170, 293
BseXI	GCAGC	3 cut(s)	31, 317, 431
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	55, 128
BspACI	CCGC	4 cut(s)	93, 151, 227, 237
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	227
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	50, 136
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	55, 128
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	135, 175, 466
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	23, 289, 295
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	58, 131
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	55, 128
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	58, 393
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	31, 317, 431
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	23, 289, 295
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
CfoI	GCGC	1 cut(s)	227
CviAII	CATG	2 cut(s)	233, 413
CviJI	RGCY	7 cut(s)	14, 44, 275, 308, 316, 334, 347
CviKI_1	RGCY	7 cut(s)	14, 44, 275, 308, 316, 334, 347
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	57, 130
DpnII	GATC	2 cut(s)	55, 128
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	2 cut(s)	236, 416
FaiI	YATR	5 cut(s)	234, 319, 414, 471, 473
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	232, 412
FauI	CCCGC	2 cut(s)	144, 220
Fnu4HI	GCNGC	5 cut(s)	45, 94, 238, 306, 420
FokI	GGATG	3 cut(s)	10, 296, 302
Fsp4HI	GCNGC	5 cut(s)	45, 94, 238, 306, 420
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	5 cut(s)	45, 94, 238, 306, 420
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	16, 416
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	236, 416
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	3 cut(s)	74, 122, 123
Hpy188I	TCNGA	3 cut(s)	104, 218, 257
Hpy188III	TCNNGA	3 cut(s)	8, 33, 169
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4III	ACNGT	3 cut(s)	135, 175, 466
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	47, 305, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	236, 416
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	55, 128
Lsp1109I	GCAGC	3 cut(s)	31, 317, 431
LweI	GCATC	2 cut(s)	8, 277
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	57, 130
MboI	GATC	2 cut(s)	55, 128
MboII	GAAGA	4 cut(s)	436, 439, 448, 451
MluCI	AATT	2 cut(s)	86, 359
MmeI	TCCRAC	1 cut(s)	235
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	60, 395
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	416
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	55, 128
NlaIII	CATG	2 cut(s)	236, 416
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	46, 95, 239, 307, 421
Psp6I	CCWGG	1 cut(s)	393
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	49
SatI	GCNGC	5 cut(s)	45, 94, 238, 306, 420
Sau3AI	GATC	2 cut(s)	55, 128
ScrFI	CCNGG	2 cut(s)	60, 395
SetI	ASST	9 cut(s)	46, 162, 216, 264, 310, 318, 349, 396, 495
SfaNI	GCATC	2 cut(s)	8, 277
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	86, 359
SsiI	CCGC	4 cut(s)	93, 151, 227, 237
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	58, 393
TaaI	ACNGT	3 cut(s)	135, 175, 466
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	86, 359
TauI	GCSGC	2 cut(s)	96, 240
TfiI	GAWTC	1 cut(s)	370
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	3 cut(s)	44, 305, 419
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	440, 458
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	86, 359
XspI	CTAG	1 cut(s)	496
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.