Rh7CG166700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001546
Physical Location & Seq
Forward (+)
13848105 .. 13848326
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG166700.1

Sequence Viewer

Length: 222 bp
ATGCGAGTCGTCGTTAACAATATAGGCGAGGACGAGGTCCTCGAGCTTCTTGGAGAGAGTGGACTCGATGTGGGCGAGCTTGGCCTTGGCGGTGTCGACGGTCTCATGGTCGGGACGGTCGTCGAGGGCGTTGAGGATGAAGCGGGTCTGGGCGACGTCGAAGACGGCGCGGGTCATGGCGGCGATGGCTTTGGGGTCGGAGAGGTGGGGGCATCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.07

Weight (kDa)

4.05

Isoelectric Point (pI)

15.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 90, 143, 170, 180
AcyI GRCGYC 1 cut(s) 156
AluBI AGCT 2 cut(s) 46, 79
AluI AGCT 2 cut(s) 46, 79
Alw26I GTCTC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 168
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 37
BoxI GACNNNNGTC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 41
BspACI CCGC 4 cut(s) 90, 143, 170, 180
BspANI GGCC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 101, 118
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 77
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 107
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 81, 186
BstPAI GACNNNNGTC 1 cut(s) 119
BstUI CGCG 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 2 cut(s) 106, 176
CviJI RGCY 4 cut(s) 46, 79, 84, 189
CviKI_1 RGCY 4 cut(s) 46, 79, 84, 189
Eco130I CCWWGG 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 109, 179
FaiI YATR 3 cut(s) 23, 107, 177
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 105, 175
FauI CCCGC 2 cut(s) 136, 163
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 84
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 109, 179
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 16, 97
HindII GTYRAC 2 cut(s) 16, 97
HinfI GANTC 2 cut(s) 6, 63
HpaI GTTAAC 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 16, 62, 97
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 3 cut(s) 16, 62, 97
Hpy99I CGWCG 5 cut(s) 14, 101, 125, 158, 161
HpyCH4III ACNGT 2 cut(s) 101, 118
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 186
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 109, 179
HspAI GCGC 1 cut(s) 168
KspAI GTTAAC 1 cut(s) 16
LpnPI CCDG 1 cut(s) 134
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 156
MboII GAAGA 1 cut(s) 173
MlyI GAGTC 2 cut(s) 15, 57
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 6 cut(s) 22, 28, 50, 118, 127, 196
MseI TTAA 1 cut(s) 15
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 81, 186
NlaIII CATG 2 cut(s) 109, 179
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 72, 117, 126
PflFI GACNNNGTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 2 cut(s) 14, 57
PpsI GAGTC 2 cut(s) 14, 57
PpuMI RGGWCCY 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 37
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 35
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 2 cut(s) 15, 57
SetI ASST 5 cut(s) 39, 48, 81, 159, 207
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 4 cut(s) 90, 143, 170, 180
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 101, 118
TaiI ACGT 1 cut(s) 159
TaqI TCGA 5 cut(s) 42, 66, 96, 123, 159
TauI GCSGC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 216
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.