Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Forward (+)

75173603 .. 75176156

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGACCAGATCAATGGCCAAGGATCTGAGCGGGACTGTGAAGGAGAAACTTTCGGTTGTGTGCACGATCAACGTGCGCCCCTGCAAACGCTGCTACTTGGACTCTAGGAGGCTGGATTATGGAATCAGGGCAGGACCCGAAGCTGCAATTGTTGATCCGGGCGACGTTGGGGTAGTGGTGGGAGAATTTGGCGGCAATTTCGGAGGGGGTGATAAAGGAGAGTTTGGATTACCGTTAAGGGTGTGGTTGCGGGAGGAGGTTTTGGTCGGGACGGTCGCCGAGGGCGTTGAGGATGGAGCGGGTCTGGGCAACGTCGGAGAAGGCGCAGGTCATGGCGGCGATGACTTTGGGGTCGGAGAGGTAGGGCATCTGGCTGAGGAGGATGAGGATGGTTGCTGGGGTATAGTCAACTGGGGCTGGCCACGTTTGTGTGTTGATGGCATTGAAAGCACAGGGTCTTCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.32

Weight (kDa)

4.63

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	320
AccBSI	CCGCTC	2 cut(s)	33, 302
AciI	CCGC	5 cut(s)	33, 195, 253, 302, 339
AclWI	GGATC	2 cut(s)	33, 152
AcoI	YGGCCR	2 cut(s)	18, 422
AcsI	RAATTY	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	449
AleI	CACNNNNGTG	1 cut(s)	430
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	68
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	33, 152
AoxI	GGCC	2 cut(s)	18, 422
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	93, 146
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	81, 329
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	68
BalI	TGGCCA	2 cut(s)	20, 424
BbsI	GAAGAC	2 cut(s)	11, 453
Bbv12I	GWGCWC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	80, 133
BccI	CCATC	3 cut(s)	290, 386, 434
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	94, 147, 196, 340
BlsI	GCNGC	4 cut(s)	95, 148, 197, 341
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	2 cut(s)	11, 453
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	21, 282
Bse1I	ACTGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	21, 282
BseGI	GGATG	3 cut(s)	301, 391, 397
BseMII	CTCAG	2 cut(s)	20, 369
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	272, 395
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	80, 133
BseYI	CCCAGC	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	20, 424
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	49, 286
BsmFI	GGGAC	2 cut(s)	49, 286
BsnI	GGCC	2 cut(s)	20, 424
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	11, 25, 69, 157
BspACI	CCGC	5 cut(s)	33, 195, 253, 302, 339
BspANI	GGCC	2 cut(s)	20, 424
BspCNI	CTCAG	2 cut(s)	21, 370
BspLI	GGNNCC	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	33, 152
BsrBI	CCGCTC	2 cut(s)	33, 302
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	21, 282
BssMI	GATC	4 cut(s)	11, 25, 69, 157
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	40, 237, 277
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	29, 378
BstF5I	GGATG	3 cut(s)	301, 391, 397
BstHHI	GCGC	2 cut(s)	81, 329
BstKTI	GATC	4 cut(s)	14, 28, 72, 160
BstMBI	GATC	4 cut(s)	11, 25, 69, 157
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 450
BstSCI	CCNGG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	80, 133
BstV2I	GAAGAC	2 cut(s)	11, 453
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	20, 424
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	301, 391, 397
BveI	ACCTGC	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	2 cut(s)	81, 329
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	6 cut(s)	20, 115, 146, 377, 420, 424
CviKI_1	RGCY	6 cut(s)	20, 115, 146, 377, 420, 424
DdeI	CTNAG	2 cut(s)	29, 378
DpnI	GATC	4 cut(s)	13, 27, 71, 159
DpnII	GATC	4 cut(s)	11, 25, 69, 157
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	2 cut(s)	18, 422
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	338
FaiI	YATR	3 cut(s)	123, 336, 407
FaqI	GGGAC	2 cut(s)	49, 286
FatI	CATG	1 cut(s)	334
FauI	CCCGC	3 cut(s)	26, 246, 295
Fnu4HI	GCNGC	4 cut(s)	94, 147, 196, 340
FokI	GGATG	3 cut(s)	308, 398, 404
Fsp4HI	GCNGC	4 cut(s)	94, 147, 196, 340
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	80, 328
GluI	GCNGC	4 cut(s)	94, 147, 196, 340
GsaI	CCCAGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	20, 424
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	2 cut(s)	81, 329
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	2 cut(s)	79, 327
HinP1I	GCGC	2 cut(s)	79, 327
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	104, 126
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	66, 412
Hpy188I	TCNGA	4 cut(s)	30, 206, 320, 359
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	66, 412
Hpy99I	CGWCG	2 cut(s)	170, 320
HpyAV	CCTTC	2 cut(s)	37, 317
HpyCH4III	ACNGT	3 cut(s)	40, 237, 277
HpyCH4IV	ACGT	4 cut(s)	75, 168, 315, 427
HpyCH4V	TGCA	3 cut(s)	66, 87, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 450
HpyF3I	CTNAG	2 cut(s)	29, 378
HpySE526I	ACGT	4 cut(s)	75, 168, 315, 427
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	2 cut(s)	79, 327
Kzo9I	GATC	4 cut(s)	11, 25, 69, 157
LmnI	GCTCC	1 cut(s)	299
Lsp1109I	GCAGC	2 cut(s)	80, 133
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	4 cut(s)	75, 168, 315, 427
MalI	GATC	4 cut(s)	13, 27, 71, 159
MbiI	CCGCTC	2 cut(s)	33, 302
MboI	GATC	4 cut(s)	11, 25, 69, 157
MboII	GAAGA	2 cut(s)	16, 453
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	68
MlsI	TGGCCA	2 cut(s)	20, 424
MluCI	AATT	3 cut(s)	150, 188, 199
MluNI	TGGCCA	2 cut(s)	20, 424
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	298, 337
Mox20I	TGGCCA	2 cut(s)	20, 424
MscI	TGGCCA	2 cut(s)	20, 424
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	430
Msp20I	TGGCCA	2 cut(s)	20, 424
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	2 cut(s)	93, 450
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	11, 25, 69, 157
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	95, 148, 197, 341
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	137
PspPPI	RGGWCCY	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	4 cut(s)	94, 147, 196, 340
Sau3AI	GATC	4 cut(s)	11, 25, 69, 157
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	8 cut(s)	78, 148, 171, 264, 318, 334, 366, 430
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	150, 188, 199
SsiI	CCGC	5 cut(s)	33, 195, 253, 302, 339
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	40, 237, 277
TaiI	ACGT	4 cut(s)	78, 171, 318, 430
TasI	AATT	3 cut(s)	150, 188, 199
TauI	GCSGC	2 cut(s)	198, 342
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	2 cut(s)	93, 146
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.