Rh1CG231200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001546
Physical Location & Seq
Forward (+)
48610500 .. 48612548
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG231200.1

Sequence Viewer

Length: 366 bp
ATGAAGGTGTTCGCTGCAGATCCAGCTTTACTGCTGAAGACATCAAGCAGCCCGGGAATCTGGGGTTGTAAAGGTGCAGTCAAGAAAGAAAGCAGAGATCTTTTTAGTACGAACAGATGGATTCTCTTGTACCCGAGAAAAAAAGATAATGACCAAGTCCAAGAATTTCCTCAACAATCTCATCAAAACGTTCGGGTTCAGCTAAAGCAAAGAGGACTTAGAGAGAATTGCTCAACAGGAACAGGTTCTCCAGTTTACAAGGAGTGGCAGAGATTACAAGCATCAGTTTTGAGTCGACGGAAGAGGGATGCTCTTTTTGGTTTTTGTTTTTCATGTCTTTTGCTTGTGTGGGTGGTTATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.84

Weight (kDa)

10.03

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AclI AACGTT 1 cut(s) 189
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 109, 131
AloI GAACNNNNNNTCC 2 cut(s) 232, 264
AluBI AGCT 2 cut(s) 26, 202
AluI AGCT 2 cut(s) 26, 202
AlwI GGATC 1 cut(s) 14
Ama87I CYCGRG 2 cut(s) 52, 133
ApeKI GCWGC 2 cut(s) 14, 48
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 2 cut(s) 8, 244
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 2 cut(s) 52, 133
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 111
BcnI CCSGG 2 cut(s) 53, 54
BfmI CTRYAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 97
BisI GCNGC 2 cut(s) 15, 49
BlsI GCNGC 2 cut(s) 16, 50
Bme1390I CCNGG 2 cut(s) 53, 54
BmeT110I CYCGRG 2 cut(s) 52, 133
BmrFI CCNGG 2 cut(s) 53, 54
BmsI GCATC 2 cut(s) 290, 298
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 4 cut(s) 215, 247, 295, 327
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 53, 54
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bse1I ACTGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 52, 133
BsiSI CCGG 1 cut(s) 53
BsoBI CYCGRG 2 cut(s) 52, 133
Bsp143I GATC 2 cut(s) 19, 97
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 19, 97
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 22, 100
BstMBI GATC 2 cut(s) 19, 97
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 51, 52
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 2 cut(s) 19, 97
BstYI RGATCY 2 cut(s) 19, 97
BtsCI GGATG 1 cut(s) 313
Cfr9I CCCGGG 1 cut(s) 52
Csp6I GTAC 2 cut(s) 108, 130
CviAII CATG 1 cut(s) 333
CviJI RGCY 4 cut(s) 26, 51, 202, 363
CviKI_1 RGCY 4 cut(s) 26, 51, 202, 363
CviQI GTAC 2 cut(s) 108, 130
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 21, 99
DpnII GATC 2 cut(s) 19, 97
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 2 cut(s) 52, 133
FaeI CATG 1 cut(s) 336
FaiI YATR 1 cut(s) 334
FatI CATG 1 cut(s) 332
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 15, 49
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 15, 49
GluI GCNGC 2 cut(s) 15, 49
GsuI CTGGAG 1 cut(s) 234
HapII CCGG 1 cut(s) 53
Hin1II CATG 1 cut(s) 336
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HinfI GANTC 3 cut(s) 57, 121, 292
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 256, 296
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 256, 296
Hpy99I CGWCG 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 17, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 19, 97
LpnPI CCDG 6 cut(s) 36, 46, 66, 222, 228, 264
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 290, 298
MaeII ACGT 1 cut(s) 189
MalI GATC 2 cut(s) 21, 99
MboI GATC 2 cut(s) 19, 97
MboII GAAGA 2 cut(s) 49, 313
MflI RGATCY 2 cut(s) 19, 97
MluCI AATT 2 cut(s) 164, 226
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 3 cut(s) 180, 206, 297
MroXI GAANNNNTTC 2 cut(s) 8, 244
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 53, 54
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 2 cut(s) 19, 97
NlaIII CATG 1 cut(s) 336
PdmI GAANNNNTTC 2 cut(s) 8, 244
PfeI GAWTC 2 cut(s) 57, 121
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 16, 50
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 189
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 19, 97
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 109, 131
RsaNI GTAC 2 cut(s) 108, 130
SalI GTCGAC 1 cut(s) 294
SatI GCNGC 2 cut(s) 15, 49
Sau3AI GATC 2 cut(s) 19, 97
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 53, 54
SetI ASST 6 cut(s) 9, 28, 76, 192, 204, 247
SfaNI GCATC 2 cut(s) 290, 298
SfcI CTRYAG 1 cut(s) 15
SmaI CCCGGG 1 cut(s) 54
Sse9I AATT 2 cut(s) 164, 226
StyD4I CCNGG 2 cut(s) 51, 52
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 164, 226
TfiI GAWTC 2 cut(s) 57, 121
TseI GCWGC 2 cut(s) 14, 48
TspDTI ATGAA 2 cut(s) 17, 321
TspGWI ACGGA 1 cut(s) 313
TspMI CCCGGG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 155
XapI RAATTY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 2 cut(s) 8, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.