Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001546

Physical Location & Seq

Genomic Coordinates Reverse (-)

32972798 .. 32974034

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTGGTTGCGGGAGGAGGTTGTGGTTGGGACGGTCGCCGAGGGCGTTGAGGACGGAGTGGGTCGTCCGGGCGACGTCGGAGACGGCATGGGTCATGGCGGCGATGACTTTGGGGTCGGAGAGGTGGGACATCCGGCCGAGGAGGATGAGGATGGTTCGGGGTTGATGGTGTTTAAAGCACGAGCCCTCTCATTGATTGTTCATGGTTTTGTCTTTCAACACCAAATCCGAGCTCCAACGGCGCCACGCTTCTCACTCTCCGCTCCGCTATCGTGGTCTGTTCCGGCGTTGGACCTCCCCAAGCTTCGTAGTTCAACCTTGAGAATCTACGTGCAATCGCCGAGTCACCGGGTCAACTCCGCAGCGATCTCCGAATCGTTGCAGATCTCCATTGATCTCACGAGGCTCGTCCCGGATACCTTCACGTCGATTCTTCATTTGGAGTTGGACCCACTCGTCCGTGCCAAGCCCGACATCATTGATGAGGTTGGAGTTGATGTGCATGATCTAATTTTATTCCTCTACATTCAGTGCCTACAAGAAATTGTTGCCCAAAACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC

Protein Analysis

187

Amino Acids

20.27

Weight (kDa)

4.68

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001546)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342431 RchiOBHm_Chr4g0430961 RchiOBHm_Chr6g0270281
rosa_laevigata	RLG00000006605 RLG00000009811 RLG00000011435 RLG00000012946 RLG00000027978 RLG00000028043 RLG00000036035
rosa_multiflora	Rmu_sc0008074.1_g000004 Rmu_sc0028314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011520 Rroxscaffold_2G00108900 Rroxscaffold_2G00132280 Rroxscaffold_5G00336480
rosa_rugosa	Rorug01G0117200 Rorug02G0399300 Rorug03G0283100 Rorug06G0070200 Rorug06G0072400
rosa_samantha	Rh1BG203600 Rh1CG231200 Rh2BG534400 Rh2BG534500 Rh2BG580200 Rh2CG319900 Rh2DG032100 Rh2DG116300 Rh2DG543400 Rh3AG332700 Rh3BG331800 Rh3CG283400 Rh3DG309000 Rh4CG117500 Rh4DG189000 Rh4DG250700 Rh4DG307700 Rh5AG172300 Rh5BG398000 Rh5CG338500 Rh5CG338600 Rh5DG345700 Rh6AG024800 Rh6CG162400 Rh7BG245400 Rh7BG447500 Rh7CG166700 Rh7DG256800
rosa_wichuraiana	Rw1G004220 Rw4G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	113, 455
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	5 cut(s)	10, 99, 261, 266, 360
AcoI	YGGCCR	1 cut(s)	135
AcyI	GRCGYC	2 cut(s)	75, 242
AgsI	TTSAA	2 cut(s)	218, 315
AjiI	CACGTC	1 cut(s)	426
AluBI	AGCT	2 cut(s)	233, 304
AluI	AGCT	2 cut(s)	233, 304
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	292, 448
AsuC2I	CCSGG	3 cut(s)	69, 350, 413
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	292, 448
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	2 cut(s)	187, 235
BauI	CACGAG	2 cut(s)	180, 400
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	2 cut(s)	146, 160
BceAI	ACGGC	2 cut(s)	100, 255
BciVI	GTATCC	1 cut(s)	409
BcnI	CCSGG	3 cut(s)	69, 350, 413
BcoDI	GTCTC	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	2 cut(s)	100, 363
BlsI	GCNGC	2 cut(s)	101, 364
Bme1390I	CCNGG	3 cut(s)	69, 350, 413
Bme18I	GGWCC	2 cut(s)	292, 448
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	2 cut(s)	292, 448
BmiI	GGNNCC	2 cut(s)	243, 450
BmrFI	CCNGG	3 cut(s)	69, 350, 413
BpuEI	CTTGAG	1 cut(s)	340
BpuMI	CCSGG	3 cut(s)	69, 350, 413
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	2 cut(s)	75, 242
BsaJI	CCNNGG	2 cut(s)	39, 138
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
BseDI	CCNNGG	2 cut(s)	39, 138
BseGI	GGATG	3 cut(s)	130, 151, 157
BseRI	GAGGAG	2 cut(s)	29, 155
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	2 cut(s)	36, 138
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	241
BsiEI	CGRYCG	2 cut(s)	36, 138
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	5 cut(s)	68, 134, 284, 349, 413
BslFI	GGGAC	3 cut(s)	43, 141, 395
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	3 cut(s)	43, 141, 395
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	187, 235
Bsp143I	GATC	4 cut(s)	366, 384, 394, 505
BspACI	CCGC	5 cut(s)	10, 99, 261, 266, 360
BspANI	GGCC	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	243, 450
BspT107I	GGYRCC	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	39, 138
BssMI	GATC	4 cut(s)	366, 384, 394, 505
BssNI	GRCGYC	2 cut(s)	75, 242
BssSI	CACGAG	2 cut(s)	180, 400
Bst2BI	CACGAG	2 cut(s)	180, 400
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	2 cut(s)	75, 242
BstBAI	YACGTR	1 cut(s)	331
BstF5I	GGATG	3 cut(s)	130, 151, 157
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	369, 387, 397, 508
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	4 cut(s)	366, 384, 394, 505
BstMCI	CGRYCG	2 cut(s)	36, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSCI	CCNGG	3 cut(s)	67, 348, 411
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZI	CGGCCG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	130, 151, 157
BtsIMutI	CAGTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	292, 448
CviAII	CATG	4 cut(s)	88, 95, 203, 503
CviJI	RGCY	6 cut(s)	137, 185, 233, 304, 406, 469
CviKI_1	RGCY	6 cut(s)	137, 185, 233, 304, 406, 469
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	4 cut(s)	368, 386, 396, 507
DpnII	GATC	4 cut(s)	366, 384, 394, 505
DraI	TTTAAA	1 cut(s)	175
DrdI	GACNNNNNNGTC	2 cut(s)	113, 455
DseDI	GACNNNNNNGTC	2 cut(s)	113, 455
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	187, 235
Eco47I	GGWCC	2 cut(s)	292, 448
Eco52I	CGGCCG	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	233
EcoT38I	GRGCYC	2 cut(s)	187, 235
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	91, 98, 206, 506
FaiI	YATR	5 cut(s)	89, 96, 204, 504, 562
FaqI	GGGAC	3 cut(s)	43, 141, 395
FatI	CATG	4 cut(s)	87, 94, 202, 502
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	100, 363
FokI	GGATG	3 cut(s)	117, 158, 164
FriOI	GRGCYC	2 cut(s)	187, 235
Fsp4HI	GCNGC	2 cut(s)	100, 363
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	2 cut(s)	100, 363
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	5 cut(s)	68, 134, 284, 349, 413
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	2 cut(s)	75, 242
Hin1II	CATG	4 cut(s)	91, 98, 206, 506
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	324, 343, 374, 430
HpaII	CCGG	5 cut(s)	68, 134, 284, 349, 413
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	80, 119, 230, 373
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	3 cut(s)	77, 80, 430
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	4 cut(s)	75, 330, 425, 558
HpyCH4V	TGCA	3 cut(s)	334, 382, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	4 cut(s)	75, 330, 425, 558
Hsp92I	GRCGYC	2 cut(s)	75, 242
Hsp92II	CATG	4 cut(s)	91, 98, 206, 506
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	366, 384, 394, 505
LmnI	GCTCC	2 cut(s)	238, 268
LpnPI	CCDG	5 cut(s)	81, 147, 297, 362, 426
Lsp1109I	GCAGC	1 cut(s)	374
MaeII	ACGT	4 cut(s)	75, 330, 425, 558
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	368, 386, 396, 507
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	4 cut(s)	366, 384, 394, 505
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	187, 235
MluCI	AATT	2 cut(s)	510, 543
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	6 cut(s)	58, 97, 260, 270, 426, 469
MseI	TTAA	1 cut(s)	174
MspI	CCGG	5 cut(s)	68, 134, 284, 349, 413
MspR9I	CCNGG	3 cut(s)	69, 350, 413
MwoI	GCNNNNNNNGC	1 cut(s)	239
NarI	GGCGCC	1 cut(s)	242
NciI	CCSGG	3 cut(s)	69, 350, 413
NdeII	GATC	4 cut(s)	366, 384, 394, 505
NlaIII	CATG	4 cut(s)	91, 98, 206, 506
NlaIV	GGNNCC	2 cut(s)	243, 450
NmeAIII	GCCGAG	3 cut(s)	64, 163, 366
NmuCI	GTSAC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	324, 374, 430
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	2 cut(s)	101, 364
PleI	GAGTC	1 cut(s)	351
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	243, 450
PspPI	GGNCC	2 cut(s)	292, 448
PsuI	RGATCY	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	100, 363
Sau3AI	GATC	4 cut(s)	366, 384, 394, 505
Sau96I	GGNCC	2 cut(s)	292, 448
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	3 cut(s)	69, 350, 413
SduI	GDGCHC	2 cut(s)	187, 235
SfoI	GGCGCC	1 cut(s)	243
SinI	GGWCC	2 cut(s)	292, 448
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	510, 543
SsiI	CCGC	5 cut(s)	10, 99, 261, 266, 360
SspDI	GGCGCC	1 cut(s)	241
SstI	GAGCTC	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	67, 348, 411
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	4 cut(s)	78, 333, 428, 561
TaqI	TCGA	1 cut(s)	428
TasI	AATT	2 cut(s)	510, 543
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	3 cut(s)	324, 374, 430
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	191, 425
TspGWI	ACGGA	2 cut(s)	69, 449
TspRI	CASTG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	292, 448
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.