Rmu_sc0000064.1_g000029
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000064.1
OG0002868
Physical Location & Seq
Forward (+)
187544 .. 188394
851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atgatatttttgccttttcaaaatgtagagacgcagttgaacagacatggagaaagagaatggtactttttcactcccagggagcgaaagtacccccatggttcacggccaaatcgaacagcacacgatggattctggaaggtaactggaaaagatgaagtcattacatcagctacaggtgaaataattggatacaaaaatactcttgattactttgaagggacacattcagaaaaccaaaagaccaaatggaaaatgcatgaatatagactaaagaaatcagagagagatgaagatattgctgcttcaaataatgaaaaatgtcaacgtgatatgaagttggatgattgtgttttgtgtaagatttacacaagtaacagatgcaaggccgggaaaagcaccaagaaaattagcaacagtgcaaagaaaccattcaattctgtccaagatagagatgatcagcatgaaaatcaggatcaaccaacttttggtggtgattacaattccaattctcccgctgcatttaacaatggttatggttcgacgaacaaattttgtgaccctgcaaatcttcctctgcaagatcaagcttatggcatcgcccatccttcaggacacatcaataacttcaataatcaaaacaatacacattacaacatgcactcaagttctttggaagatcatgtcagagattttgagcgttggttaattacagccgtgcacgaagaaggcaaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

246

Amino Acids

28.5

Weight (kDa)

7.19

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 91 1.9e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 488
AciI CCGC 1 cut(s) 516
AclWI GGATC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 107
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 2 cut(s) 65, 92
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 6 cut(s) 20, 40, 218, 309, 436, 631
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 173, 590
AluI AGCT 2 cut(s) 173, 590
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 23
Alw44I GTGCAC 1 cut(s) 719
AlwI GGATC 1 cut(s) 483
AoxI GGCC 2 cut(s) 107, 387
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 2 cut(s) 302, 518
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 191, 506
BaeGI GKGCMC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 289, 505
BccI CCATC 2 cut(s) 122, 612
BceAI ACGGC 2 cut(s) 122, 701
BciT130I CCWGG 1 cut(s) 79
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 2 cut(s) 303, 519
BlsI GCNGC 2 cut(s) 304, 520
Bme1390I CCNGG 2 cut(s) 79, 391
BmrFI CCNGG 2 cut(s) 79, 391
BmsI GCATC 2 cut(s) 371, 606
BpuEI CTTGAG 1 cut(s) 649
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 77, 78, 97
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 77, 78, 97
BseGI GGATG 2 cut(s) 349, 604
BseLI CCNNNNNNNGG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 723
BseXI GCAGC 2 cut(s) 289, 505
BshFI GGCC 2 cut(s) 109, 389
BsiHKAI GWGCWC 1 cut(s) 723
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 109, 389
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 4 cut(s) 457, 475, 583, 679
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 1 cut(s) 516
BspANI GGCC 2 cut(s) 109, 389
BspPI GGATC 1 cut(s) 483
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 77, 78, 97
BssMI GATC 4 cut(s) 457, 475, 583, 679
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 419
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 349, 604
BstKTI GATC 4 cut(s) 460, 478, 586, 682
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 457, 475, 583, 679
BstNI CCWGG 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 77, 389
BstSFI CTRYAG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 723
BstV1I GCAGC 2 cut(s) 289, 505
BsuI GTATCC 1 cut(s) 185
BsuRI GGCC 2 cut(s) 109, 389
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 583
BtsCI GGATG 2 cut(s) 349, 604
BtsIMutI CAGTG 1 cut(s) 424
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 64, 91
CviAII CATG 6 cut(s) 47, 98, 260, 464, 658, 683
CviJI RGCY 5 cut(s) 109, 173, 389, 590, 716
CviKI_1 RGCY 5 cut(s) 109, 173, 389, 590, 716
CviQI GTAC 2 cut(s) 64, 91
DpnI GATC 4 cut(s) 459, 477, 585, 681
DpnII GATC 4 cut(s) 457, 475, 583, 679
EaeI YGGCCR 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 6 cut(s) 50, 101, 263, 467, 661, 686
FaqI GGGAC 1 cut(s) 235
FatI CATG 6 cut(s) 46, 97, 259, 463, 657, 682
FauI CCCGC 1 cut(s) 523
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 303, 519
FokI GGATG 2 cut(s) 356, 591
Fsp4HI GCNGC 2 cut(s) 303, 519
GluI GCNGC 2 cut(s) 303, 519
HaeIII GGCC 2 cut(s) 109, 389
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 40
Hin1II CATG 6 cut(s) 50, 101, 263, 467, 661, 686
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 1 cut(s) 132
HpaII CCGG 1 cut(s) 390
HphI GGTGA 2 cut(s) 191, 506
Hpy166II GTNNAC 3 cut(s) 104, 326, 721
Hpy188I TCNGA 3 cut(s) 232, 283, 689
Hpy188III TCNNGA 4 cut(s) 136, 206, 473, 612
Hpy8I GTNNAC 3 cut(s) 104, 326, 721
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 4 cut(s) 133, 212, 618, 722
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 8 cut(s) 259, 384, 422, 521, 566, 580, 661, 721
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 6 cut(s) 50, 101, 263, 467, 661, 686
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 4 cut(s) 457, 475, 583, 679
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 64, 91, 121, 132, 162, 403, 458, 576, 597
Lsp1109I GCAGC 2 cut(s) 289, 505
LweI GCATC 2 cut(s) 371, 606
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 3 cut(s) 142, 374, 557
MalI GATC 4 cut(s) 459, 477, 585, 681
MboI GATC 4 cut(s) 457, 475, 583, 679
MboII GAAGA 4 cut(s) 305, 563, 689, 737
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 7 cut(s) 186, 408, 436, 502, 508, 551, 708
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 1 cut(s) 585
Mph1103I ATGCAT 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 2 cut(s) 525, 707
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 2 cut(s) 79, 391
MvaI CCWGG 1 cut(s) 79
NciI CCSGG 1 cut(s) 391
NcoI CCATGG 1 cut(s) 97
NdeII GATC 4 cut(s) 457, 475, 583, 679
NlaIII CATG 6 cut(s) 50, 101, 263, 467, 661, 686
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 261
NspI RCATGY 1 cut(s) 661
PasI CCCWGGG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 488
PkrI GCNGC 2 cut(s) 304, 520
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
RsaI GTAC 2 cut(s) 65, 92
RsaNI GTAC 2 cut(s) 64, 91
SaqAI TTAA 2 cut(s) 525, 707
SatI GCNGC 2 cut(s) 303, 519
Sau3AI GATC 4 cut(s) 457, 475, 583, 679
ScrFI CCNGG 2 cut(s) 79, 391
SduI GDGCHC 1 cut(s) 723
SetI ASST 5 cut(s) 144, 175, 181, 331, 592
SfaNI GCATC 2 cut(s) 371, 606
SfcI CTRYAG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
Sse9I AATT 7 cut(s) 186, 408, 436, 502, 508, 551, 708
SsiI CCGC 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 77, 389
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 115, 542
TasI AATT 7 cut(s) 186, 408, 436, 502, 508, 551, 708
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 525, 707
Tru9I TTAA 2 cut(s) 525, 707
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 302, 518
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 6 cut(s) 171, 276, 306, 330, 350, 480
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 488
VneI GTGCAC 1 cut(s) 719
XapI RAATTY 1 cut(s) 551
XceI RCATGY 1 cut(s) 661
XmnI GAANNNNTTC 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.